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SCNpilot_cont_300_bf_scaffold_4980_curated_6

Organism: scnpilot_dereplicated_Brevundimonas_1

near complete RP 48 / 55 MC: 2 BSCG 44 / 51 MC: 3 ASCG 10 / 38
Location: 5869..6501

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QT35_BREDI similarity UNIREF
DB: UNIREF100
  • Identity: 88.0
  • Coverage: 191.0
  • Bit_score: 336
  • Evalue 2.10e-89
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.0
  • Coverage: 191.0
  • Bit_score: 336
  • Evalue 2.90e-89
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 78.6
  • Coverage: 182.0
  • Bit_score: 293
  • Evalue 4.80e-77

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Taxonomy

Brevundimonas diminuta → Brevundimonas → Caulobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 633
TTGGCGACAACCGTCGACCCCGACGAGGATCTGGTGCGCCGCGTGGGCGAAGGCGACCCTGCGGCCATTCAGGCCATGGTGGCGCGCAAGCTGCCGCGCATGTTGTCGCTCGCCCGGCGGATGCTGGGCGACGCGGCGGAGGCTGAGGACGTGGCTCAGGAAGCGATGCTCAGAGCCTGGAGACAGGCGCCGCGCTGGACCCCCGGCCAGGCGCGGTTCGACACCTGGCTGCACCGGGTGGGCTTGAACCTGTGCTACGATCGGCTGCGACGTCGGCGCGAGATCGCGACGGATGTGTTGCCGGACGGCGTCGACGACGGCCCGGCGCCGGACCGGGGCCTGCTGGCGGCCGAGACGGGCGCGCGGGTCGAAGCGGCCCTAGCGCGTCTGCCGGAACGGCAGCGCGAAGCCATCGTCCTCTGTCACTATCAGGAGCTGGGCAATATCGAAGCCGCCGCCCTGATGGAGATCAGCGTCGAAGCGCTGGAAAGCCTGTTGTCGCGGGGCCGACGCGCCTTGCGGACCGCCCTGGCGGACATCGCGCCGCATTCTGGCGTCGCGCGGGATGGGCGACAGGGCATGCGAGGGCGCGCCGCGGAGCGCGCCGAACGACTGTGGCGGGGGACGAGATGA
PROTEIN sequence
Length: 211
LATTVDPDEDLVRRVGEGDPAAIQAMVARKLPRMLSLARRMLGDAAEAEDVAQEAMLRAWRQAPRWTPGQARFDTWLHRVGLNLCYDRLRRRREIATDVLPDGVDDGPAPDRGLLAAETGARVEAALARLPERQREAIVLCHYQELGNIEAAALMEISVEALESLLSRGRRALRTALADIAPHSGVARDGRQGMRGRAAERAERLWRGTR*