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SCNpilot_expt_1000_bf_scaffold_988_curated

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Displaying items 31-59 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_988_curated_31
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33483..33842
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Comamonas sp. B-9 RepID=UPI0003959187
Uncharacterized protein {ECO:0000313|EMBL:ENO77733.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_988_curated_32

Not on your lists

comp(33921..34712)
DNA (792bp) protein (264aa)
Metallo-beta-lactamase superfamily n=1 Tax=uncultured organism RepID=T1W7U4_9ZZZZ
Metallo-beta-lactamase superfamily {ECO:0000313|EMBL:AGU10589.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
putative metal-dependent hydrolase of the beta-lactamase superfamily I
SCNpilot_expt_1000_bf_scaffold_988_curated_33
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34786..35940)
DNA (1155bp) protein (385aa)
Putative lipoprotein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0A8N8_COLFT
nlpB; putative lipoprotein; K07287 lipoprotein-34
Putative lipoprotein {ECO:0000313|EMBL:AEK61511.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
SCNpilot_expt_1000_bf_scaffold_988_curated_34
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35937..36815)
DNA (879bp) protein (293aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=159450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sacchari.;"
dapA; dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
dihydrodipicolinate synthase n=1 Tax=Herbaspirillum seropedicae RepID=UPI000317D8FE
SCNpilot_expt_1000_bf_scaffold_988_curated_35
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36843..37430)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00036E0F5E
Putative tellurite resistance protein {ECO:0000313|EMBL:ENO86912.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_988_curated_36
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37626..40376
DNA (2751bp) protein (917aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWK4_9BURK
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EFV95108.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
putative CHASE/GGDEF/EAL domain-containing signal transduction protein
SCNpilot_expt_1000_bf_scaffold_988_curated_37
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40367..41569)
DNA (1203bp) protein (401aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
Tryptophan--tRNA ligase n=1 Tax=Thauera phenylacetica B4P RepID=N6ZN93_9RHOO
SCNpilot_expt_1000_bf_scaffold_988_curated_38
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41571..42221)
DNA (651bp) protein (217aa)
Putative integral membrane transmembrane protein id=1348881 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
peptidase M50
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_988_curated_39
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42285..42944)
DNA (660bp) protein (220aa)
translation factor Sua5 n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI00034AC255
hypothetical protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
SCNpilot_expt_1000_bf_scaffold_988_curated_40
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42941..43858)
DNA (918bp) protein (306aa)
phosphoesterase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002F129F2
hypothetical protein; K07053
Uncharacterized protein {ECO:0000313|EMBL:CAQ69141.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
SCNpilot_expt_1000_bf_scaffold_988_curated_41
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43855..44760)
DNA (906bp) protein (302aa)
alpha/beta hydrolase n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI000370EC68
Alpha/beta hydrolase {ECO:0000313|EMBL:KGF81530.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
hydrolase
SCNpilot_expt_1000_bf_scaffold_988_curated_42
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44812..46482
DNA (1671bp) protein (557aa)
AMP-binding protein (EC:6.2.1.-); K01895 acetyl-CoA synthetase [EC:6.2.1.1]
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00030E17D6
AMP-binding protein {ECO:0000313|EMBL:KIF80851.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
SCNpilot_expt_1000_bf_scaffold_988_curated_43
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46515..47516
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SHV3_METPP
Uncharacterized protein {ECO:0000313|EMBL:EWS53114.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
hypothetical protein; K09151 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_988_curated_44
Roseobacter sp. GAI101, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47596..48132
DNA (537bp) protein (179aa)
Transferase hexapeptide repeat protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RQM4_9RHOB
Transferase hexapeptide repeat protein {ECO:0000313|EMBL:EEB85980.1}; TaxID=391589 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. GAI101.;"
putative transferase
SCNpilot_expt_1000_bf_scaffold_988_curated_45
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48223..48567)
DNA (345bp) protein (115aa)
Cell division protein FtsB n=3 Tax=Thauera RepID=C4ZJN7_THASP
septum formation initiator; K05589 cell division protein FtsB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_expt_1000_bf_scaffold_988_curated_46
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48598..49881)
DNA (1284bp) protein (428aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
eno; phosphopyruvate hydratase (EC:4.2.1.11); K01689 enolase [EC:4.2.1.11]
enolase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002DBEBC9
SCNpilot_expt_1000_bf_scaffold_988_curated_47
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49878..50177)
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WM75_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR72509.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_988_curated_48
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50202..51053)
DNA (852bp) protein (284aa)
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Bordetella sp. FB-8 RepID=UPI000363F186
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_988_curated_49
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51061..52752)
DNA (1692bp) protein (564aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2]
CTP synthase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWL7_9BURK
SCNpilot_expt_1000_bf_scaffold_988_curated_50
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52776..53795)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI000371715F
czcD2; putative cobalt-zinc-cadmium resistance protein; K03295 cation efflux system protein, CDF family
Putative cobalt-zinc-cadmium resistance protein {ECO:0000313|EMBL:CAL94035.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
SCNpilot_expt_1000_bf_scaffold_988_curated_51
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53917..54618
DNA (702bp) protein (234aa)
lpsI; 3-oxoacid CoA-transferase subunit A (EC:2.8.3.5); K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
3-oxoacid CoA-transferase subunit A {ECO:0000313|EMBL:CAP42128.1}; EC=2.8.3.5 {ECO:0000313|EMBL:CAP42128.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036EAFC3
SCNpilot_expt_1000_bf_scaffold_988_curated_52
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54630..55283
DNA (654bp) protein (218aa)
3-oxoacid CoA-transferase, B subunit {ECO:0000313|EMBL:KCB37896.1}; EC=2.8.3.- {ECO:0000313|EMBL:KCB37896.1};; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
3-oxoacid CoA-transferase subunit B 1 (EC:2.8.3.5); K01029 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
3-oxoacid CoA-transferase subunit B 1 n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F5Z4_9BURK
SCNpilot_expt_1000_bf_scaffold_988_curated_53
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55301..55720)
DNA (420bp) protein (140aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] id=5083690 bin=GWF1_Burkholderiales_GWF1_66_17 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
putative Thioesterase
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_1000_bf_scaffold_988_curated_54
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55777..57060
DNA (1284bp) protein (428aa)
Uncharacterized membrane-anchored protein n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0AB14_ALKEH
hypothetical protein
Uncharacterized membrane-anchored protein {ECO:0000313|EMBL:ABI55973.1}; TaxID=187272 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
SCNpilot_expt_1000_bf_scaffold_988_curated_55
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57110..57883)
DNA (774bp) protein (258aa)
Gluconate 5-dehydrogenase oxidoreductase protein n=3 Tax=Ralstonia solanacearum RepID=F6G1D8_RALS8
idnO; gluconate 5-dehydrogenase
Short-chain dehydrogenase {ECO:0000313|EMBL:AJW46329.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
SCNpilot_expt_1000_bf_scaffold_988_curated_56
Burkholderia caribensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58053..59702
DNA (1650bp) protein (550aa)
Electron transfer flavoprotein-ubiquinone oxidoreductase {ECO:0000313|EMBL:ETY77213.1}; EC=1.5.5.1 {ECO:0000313|EMBL:ETY77213.1};; TaxID=1323664 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia caribensis MBA4.;"
electron-transferring-flavoprotein dehydrogenase (EC:1.5.5.1); K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
Electron-transferring-flavoprotein dehydrogenase n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JK26_BURP8
SCNpilot_expt_1000_bf_scaffold_988_curated_57
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59687..61087)
DNA (1401bp) protein (467aa)
heavy metal sensor kinase; K07644 two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
hypothetical protein n=1 Tax=Methylotenera mobilis RepID=UPI0003821D84
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
SCNpilot_expt_1000_bf_scaffold_988_curated_58
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61084..61800)
DNA (717bp) protein (239aa)
Winged helix family two component heavy metal response transcriptional regulator n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YM83_9RHOO
copR; two component response regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_1000_bf_scaffold_988_curated_59
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61905..62747
DNA (843bp) protein (281aa)
hypothetical protein id=12551059 bin=BDI tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
Displaying items 31-59 of 59 in total

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