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SCNpilot_expt_1000_bf_scaffold_1133_curated_23

Organism: scnpilot_dereplicated_Burkholderiales_4

near complete RP 52 / 55 MC: 2 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(19137..19649)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=2 Tax=Bordetella bronchiseptica RepID=Q7WHP5_BORBR similarity UNIREF
DB: UNIREF100
  • Identity: 94.1
  • Coverage: 170.0
  • Bit_score: 314
  • Evalue 5.20e-83
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 94.1
  • Coverage: 170.0
  • Bit_score: 314
  • Evalue 1.60e-83
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.1
  • Coverage: 170.0
  • Bit_score: 314
  • Evalue 7.30e-83

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Taxonomy

Bordetella bronchiseptica → Bordetella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 513
GACCAGGCGCGCACCATCCGCATCCCGGTGCACATGATCGAGACGATCAACAAGATGAACCGCATCAGCCGCCAGATCCTGCAGGAGACCGGCCAGGAGCCCGATCCGCAGACGCTGGCCGCGCGCATGGAGATGCCCGAGGACAAGATCCGCAAGATCCTCAAGATCGCCAAGGAGCCCATCTCCATGGAGACGCCGATCGGCGACGACGACGACTCGCACCTGGGCGACTTCATCGAGGATACGGCCACGCTCGCGCCGGCCGACGCCGCGCTGCACGCCTCGATGCACAACGTGGTCAAGGAGGTGCTGGACTCGCTCACGCCGCGCGAGGCCAAGGTGCTGCGCATGCGCTTCGGCATCGAGATGAGTACCGACCACACGCTCGAGGAAGTCGGCAAGCAGTTCGACGTCACGCGCGAGCGCATCCGCCAGATCGAGGCCAAGGCACTGCGCAAGCTGCGCCACCCGAGCCGCGCGGACAAGCTCAAGAGCTTCCTCGAAGGCCAATAG
PROTEIN sequence
Length: 171
DQARTIRIPVHMIETINKMNRISRQILQETGQEPDPQTLAARMEMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTATLAPADAALHASMHNVVKEVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ*