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SCNpilot_expt_1000_bf_scaffold_430_curated_26

Organism: scnpilot_dereplicated_Burkholderiales_4

near complete RP 52 / 55 MC: 2 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(27905..29404)

Top 3 Functional Annotations

Value Algorithm Source
Channel protein TolC n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QKT0_RALPI similarity UNIREF
DB: UNIREF100
  • Identity: 48.7
  • Coverage: 507.0
  • Bit_score: 426
  • Evalue 3.60e-116
Channel protein TolC {ECO:0000313|EMBL:AGW91634.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 48.7
  • Coverage: 507.0
  • Bit_score: 426
  • Evalue 5.00e-116
acrC5; cation/multidrug efflux system outer membrane porin; K12340 outer membrane channel protein similarity KEGG
DB: KEGG
  • Identity: 48.9
  • Coverage: 499.0
  • Bit_score: 422
  • Evalue 1.60e-115

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Taxonomy

Ralstonia pickettii → Ralstonia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1500
ATGACCGTGAGGCTGAAGACACTGGCCGCCCTGGTGGCGCTCGCGGCAGGCGCGCCGGCCTTCGCCCTCGACCTGCTCGAGGCCTACCGCGACGCACTGGCCAGCGACCCCCAGCTCGCCAGCGCCCGCTCGCAGCTGCAGGCGATCCGCGAGCGCGTGCCCCAGGCGCGCGCAGCGCTGCTGCCGCAGGTGAGCGCCACCGCCGCGGTGATGCGCCAGGACTTCGACACCAACCTCGCGCCGGCGCGCCAGTTCAACTCGCAGAGCTACGGTATCCAGCTCAGCTACCCGCTGCTGCGCAAGCCCTACAACGAAGTCCTCGAGCAGAGCAAGCTCCAGGTCACGGCCGGCGAGGCGCAGCTGCTGCAGGCCGAGCAGGACCTGATCCTGCGCGTATCGCAGGCCTACTTCGACCTGCTCGCCGCGCAGGACAACCTCGAGACCATCCGGGCGCAGAAGCGCGCCATCTCCGAGCAGCTCGCCTCGGCCAAGCGCAACTTCGAGGTCGGCACGGCCACCATCACCGACCAGCAGGAGGCGCAGGCGCGCTTCGACCTGACCTCGGCCCAGGAGATCGCCGCCCAGAACGACCTGGCGGTGCGCCGCGCGGCGCTGGCGCAGCTCATCGCCAGGCCGGTGGGCGACGTCAACGAGCTGCGTCCGGGCGTCACTCTGGAGGGACCGCAGCCGGCGGGCGAATCCGACTGGGTGCAGAGCGCACGCGACAACAACCTGCTGGTGCAGCAGCAGCGCCTGGCTGCCGACGTGGCGCAGCGCGAAATCGAGCGCCGGCGCGCCGCCTACTATCCGAGCATCGACCTGGTCGGCAACGTCGGCCATGGACGCAACTCCGCGTTCAACCTGATCGGCGTGCGCACCGACAGCGCGGCGATCGGCGTGCAGCTGTCCGTGCCCCTGTACACCGGCGGCCTCATCCAGGCCAGCGTGCGCGAGGCCACCGCGCTGCTCGATCGCTCGCTGTCCGATCTCGAGAGCTCGCGCCGGCTGGCCGAACAGAACGCACGCCAGGCCTACCTGGGCCTGAACAGCGGGCTGGCGCAGGTGGGCGCCCTCGAGGCCGCCGAACGCTCGAGCCGCCTGGCGCTCGACTCGAACGTGCTCGGCTACCAGGTCGGGGTGCGCATCAACATCGACGTGCTCAACGCGCAGCAGCAGCTGTTCGCCACCCAGAGCCAGCTCGCCCGCGCCCGCTACGACGCGCTGCTCAGCGGCCTGACGCTCAAGTCCACCACCGGGATCCTCTCCGAAACCGACCTCGCCCGCATCAATGCGCTGCTGGTGCCGCCGCGCGCGAGCACGGGCGACAGCGGTGCCGGCACCACGGCGCAGGCCCTTCCCGCACCGCAGGGCGCACCCGGCGCCACCCCGCCGCAGGGTGCTGCGCCCGGCGCTGCGCCCGCCTCCGGCGCCAAGGCCAATCCGCCCGCGCCCGCCCCGAACATGCCGCGCCAGCGCGGCGGGCGGGTGCTCAAGCGCTGA
PROTEIN sequence
Length: 500
MTVRLKTLAALVALAAGAPAFALDLLEAYRDALASDPQLASARSQLQAIRERVPQARAALLPQVSATAAVMRQDFDTNLAPARQFNSQSYGIQLSYPLLRKPYNEVLEQSKLQVTAGEAQLLQAEQDLILRVSQAYFDLLAAQDNLETIRAQKRAISEQLASAKRNFEVGTATITDQQEAQARFDLTSAQEIAAQNDLAVRRAALAQLIARPVGDVNELRPGVTLEGPQPAGESDWVQSARDNNLLVQQQRLAADVAQREIERRRAAYYPSIDLVGNVGHGRNSAFNLIGVRTDSAAIGVQLSVPLYTGGLIQASVREATALLDRSLSDLESSRRLAEQNARQAYLGLNSGLAQVGALEAAERSSRLALDSNVLGYQVGVRINIDVLNAQQQLFATQSQLARARYDALLSGLTLKSTTGILSETDLARINALLVPPRASTGDSGAGTTAQALPAPQGAPGATPPQGAAPGAAPASGAKANPPAPAPNMPRQRGGRVLKR*