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SCNpilot_expt_500_p_scaffold_2413_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_2413_curated_1
unknown

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comp(1..81)
DNA (81bp) protein (27aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_2413_curated_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(191..559)
DNA (369bp) protein (123aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12739.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_2413_curated_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(716..1552)
DNA (837bp) protein (279aa)
Periplasmic protein TonB n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Z1M3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL12738.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
periplasmic protein TonB
SCNpilot_expt_500_p_scaffold_2413_curated_4
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1568..2056)
DNA (489bp) protein (163aa)
Protein TolR n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RRA3_9PROT
Protein TolR {ECO:0000313|EMBL:EFH10155.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
tolR; biopolymer transporter; K03560 biopolymer transport protein TolR
SCNpilot_expt_500_p_scaffold_2413_curated_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2057..2785)
DNA (729bp) protein (243aa)
TolQ protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EXR7_9PROT
Biopolymer transporter ExbB {ECO:0000313|EMBL:AIL12737.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
biopolymer transport protein; K03562 biopolymer transport protein TolQ
SCNpilot_expt_500_p_scaffold_2413_curated_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2803..3210)
DNA (408bp) protein (136aa)
tol-pal system-associated acyl-CoA thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3JY10_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:AIL12736.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_2413_curated_7
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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3359..4330
DNA (972bp) protein (324aa)
glycosyl transferase family protein; K02843 heptosyltransferase II [EC:2.4.-.-]
Glycosyl transferase, family 9 n=1 Tax=alpha proteobacterium BAL199 RepID=A8TN14_9PROT
Glycosyl transferase family 9 {ECO:0000313|EMBL:CDH44094.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
SCNpilot_expt_500_p_scaffold_2413_curated_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4392..4814
DNA (423bp) protein (141aa)
Protein ApaG n=1 Tax=alpha proteobacterium BAL199 RepID=A8U0Y2_9PROT
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
apaG; protein associated with Co2+ and Mg2+ efflux
SCNpilot_expt_500_p_scaffold_2413_curated_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4929..6224
DNA (1296bp) protein (432aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225A93A
Uncharacterized protein {ECO:0000313|EMBL:AIL12734.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_2413_curated_10
Thermodesulfovibrio yellowstonii, Thermodesulfovibrio, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(6255..6779)
DNA (525bp) protein (175aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YKP4_THEYD
ErfK/YbiS/YcfS/YnhG
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:ACI20448.1}; TaxID=289376 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio.;" source="Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 /; YP87).;"
SCNpilot_expt_500_p_scaffold_2413_curated_11
unknown

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comp(6828..8021)
DNA (1194bp) protein (398aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_2413_curated_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8267..9568
DNA (1302bp) protein (434aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00010700}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01570}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
proS; prolyl-tRNA synthetase; K01881 prolyl-tRNA synthetase [EC:6.1.1.15]
Proline--tRNA ligase n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U1F1_9PROT
SCNpilot_expt_500_p_scaffold_2413_curated_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9568..10815
DNA (1248bp) protein (416aa)
Lipoprotein ABC transporter permease component LolC n=1 Tax=Acetobacter sp. CAG:977 RepID=R5QKB8_9PROT
Multidrug ABC transporter substrate-binding protein {ECO:0000313|EMBL:AIL12731.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ABC-type transport system, permease component; K09808 lipoprotein-releasing system permease protein
SCNpilot_expt_500_p_scaffold_2413_curated_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10808..11479
DNA (672bp) protein (224aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
peptide ABC transporter ATPase; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-]
ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FZ80_9RHIZ
Displaying 14 items

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