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SCNpilot_expt_500_p_scaffold_474_curated_24

Organism: scnpilot_dereplicated_Caedibacter_2

near complete RP 52 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: comp(19434..21383)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA n=1 Tax=uncultured bacterium RepID=K2EIM6_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 66.0
  • Coverage: 655.0
  • Bit_score: 813
  • Evalue 1.80e-232
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.3
  • Coverage: 650.0
  • Bit_score: 1139
  • Evalue 0.0
rpoD; RNA polymerase sigma factor (sigma70) similarity KEGG
DB: KEGG
  • Identity: 64.7
  • Coverage: 654.0
  • Bit_score: 805
  • Evalue 8.90e-231

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Taxonomy

Candidatus Caedibacter acanthamoebae → Caedibacter → Rickettsiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1950
GTGAGAACAACTGCTGAACTCCGTGAAGAACCCCAGGAAGAAGCCGCTGTTGAGCTTAAAAAAATTGATTTAAAGGCAACCTTAAAAAAGCTCATCATGAAAGGAAAAGAGAAAGGTTATATAACGTATGACCAATTAAACAATGCATTGCCGCAAGACGAATTTTCTTCAGAACAAATTGAAGATGCAATGGCAGCGATAGCTGAACTTGGTATTAATGTTATTGAAGCTGATGAAGTTGACGAAGAAGAATCTGAAAGCTCTGAAAGTCCTGACGCGGATTCTGAGGAAGATTCTGACAATGAGAATACCACTGAAATTGCTGAAGGAGGAAGAACAGATGATCCTGTTCGAATGTATTTGCGTGAAATGGGTAGAGTGGAGCTTTTATCACGTGAAGGTGAGATAGAAATAGCAAAACGCATCGAAGATGGTCGTCTCATGATGATTGATGCTATTTGTGAGAGCCCTTTAACAATCCGCGCGATTATTTCATGGCGGGATGCTCTCGAACAAAATCAAATTTCTCTACGAGATATTATTGATATTGAAGACACGAATGAAGAAGACAGTTCTGAAGAAGATCTTGATGAAGAACTGGTCGATGAAGAGGAAAATAACGAGGAAGAGAACGAAGAGGGTAAGCAAGAAGAATCTGGAGAGGGTAATGAAAGTGAGACGGAACAAAATTTATTTTCCGCTCAAGAAGAAGCCCTTAAACCCCAAATATTAGAAAAATTTGATAAAATTGCAGAAATATATGAATCTTTGCATACCTTGCAGGTTGAGCGTTTGAAGCTAGCACAGGAGAAAAAGACGCCAGCACCAAAAAATGAAAAGACTTTTAAAGAATTAAAGAAAACACTTGTTGAACTTGTTAGCGAAATTCGATTTAACCCATTACGTATTGATCAACTTGTTGACCAGCTTTATACATTAAATCGTAAATTAATGGGGCTTGAAGGAAAGATTCTACGTTATGCAACGGATTCTGGCCTTCAAAGAGAAAAATTCTTGAAAGTCTATTTTGGTCATGAGCTTGATTCTGATTGGTTATCCTCAATAAAAGACTTTGGTAAACCAGGTGATAAGTTTATCTCAAAATATGGTGAAGAAGTTCAACATATTCGTAATAACATTGCTGAGGTTTCGGTTGAATCAGGCCTGAATATCGCTGAATTTAGGCGCATTGTTGCTGACGTTCAAAAAGGAGATCGTCAGGCTCGTCGTGCTAAGAAAGAAATGATTGAAGCTAACTTGCGTCTTGTTATTTCGATTGCAAAGAAATACACCAACCGTGGTCTTCAATTTTTAGATTTAATTCAAGAAGGTAATATTGGATTAATGAAGGCGGTGGATAAGTTTGAGTATCGTCGTGGATATAAATTTTCAACGTATGCAACATGGTGGATTCGTCAAGCTATCACGCGCTCAATTGCAGATCAGGCACGTACAATACGTATTCCAGTTCATATGATTGAGACGATAAACAAGCTTGTGCGAACATCACGTCAAATGTTGCATGAAATTGGGCGTGAGCCAACACCAGAAGAACTTGCAGAAAAGCTTATGATGCCCATTGATAAGGTACGTAAAGTGATGAAAATTGCAAAAGAACCAATCAGCTTAGAAACACCGATCGGAGATGAAGAAGATGGTAGCTTAGGTGATTTTATTGAAGATAAGAATGCAATTCTTCCAATGGATGCGGCGGTCAATGCCAACTTGAGAGAAACAACAACGCGTGTTCTATCAACTTTGACACCGCGTGAAGAACGCGTTTTAAGAATGCGTTTTGGTATCGGAATGAATACAGATCATACGCTTGAAGAAGTTGGGCAACAATTCTCAGTTACACGCGAACGCATTCGTCAAATTGAAGCGAAAGCGCTTCGAAAGCTAAAACATCCAAGCCGCTCAAGAAAATTAAGAAGCTTTCTTGACTCATAA
PROTEIN sequence
Length: 650
VRTTAELREEPQEEAAVELKKIDLKATLKKLIMKGKEKGYITYDQLNNALPQDEFSSEQIEDAMAAIAELGINVIEADEVDEEESESSESPDADSEEDSDNENTTEIAEGGRTDDPVRMYLREMGRVELLSREGEIEIAKRIEDGRLMMIDAICESPLTIRAIISWRDALEQNQISLRDIIDIEDTNEEDSSEEDLDEELVDEEENNEEENEEGKQEESGEGNESETEQNLFSAQEEALKPQILEKFDKIAEIYESLHTLQVERLKLAQEKKTPAPKNEKTFKELKKTLVELVSEIRFNPLRIDQLVDQLYTLNRKLMGLEGKILRYATDSGLQREKFLKVYFGHELDSDWLSSIKDFGKPGDKFISKYGEEVQHIRNNIAEVSVESGLNIAEFRRIVADVQKGDRQARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLMMPIDKVRKVMKIAKEPISLETPIGDEEDGSLGDFIEDKNAILPMDAAVNANLRETTTRVLSTLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS*