ggKbase home page

SCNpilot_expt_500_p_scaffold_2642_curated_14

Organism: scnpilot_dereplicated_Caedibacter_2

near complete RP 52 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: 6698..7714

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.9
  • Coverage: 338.0
  • Bit_score: 643
  • Evalue 1.40e-181
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 71.6
  • Coverage: 338.0
  • Bit_score: 490
  • Evalue 5.60e-136
DNA-directed RNA polymerase subunit alpha n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=RPOA_MAGSA similarity UNIREF
DB: UNIREF100
  • Identity: 71.6
  • Coverage: 338.0
  • Bit_score: 490
  • Evalue 1.80e-135
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Candidatus Caedibacter acanthamoebae → Caedibacter → Rickettsiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1017
GTGATACAAAAAAATTGGCAAGAACTCATTAGGCCTTTTAAACTTAACATTGACCTTCTTGGCAGTGAGCATCGGCGTGCACAAGTTGTTGCTGAGCCTTTAGAAAGGGGCTTCGGCTTAACCCTCGGCACAGCTTTAAGACGTGTTCTTTTATCATCTCTTCAAGGTGCTGCCGTTACCGGCCTTCAAATTGAAGGTGTTCAGCATGAATTTAGTTCAATCCCAGGTGTTCATGAAGATGTGACTGAGATTATCCTTAATCTTAAAGCTCTTTCTCTTCGTAAGCATTCTGAAGGAGCAAAAAAGCTTCGCCTTAAAGCTGAAGGTCCTGGTATTATCACAGCAGCTCAATTTGAAGCGACCTCTGATATTGAAATTCTTGATCCTGAGCTTGTTATCTGTGTCTTAGACGCTGGCGCAAAAATTTCAATGGAAGTTACCGTTGAGAATGGTAAGGGGTATGTTCCCGCTGGTCAGCTTAGACGTGAAGATGCACCTATTAGTTTTATTCCTGTAGATGCTCTTTTCTCACCTGTTCGTCGCGTTTCTTACAAAGTTGAAGATACGCGTGTTGGTCAACGTACTGACTACGATAAACTTATCCTTGATGTTGAGACGAATGGTGCTGTTCGTCCCGAAGATGCAGTTGCGTTAGCATCTCGTATTTTACAAGATCAACTGCAACAGTTTATCAATTTTGAAGAACCAGTGGCACCAGAAGAAAAAGATCAAGAAGCTGAGCTTCCCTTTAGCCGTGCCCTTCTTAAAAAGGTTGAAGAACTTGAACTTTCTGTACGTTCCGCAAATTGCTTGAAGAATGAAAATATCGTTTATATTGGTGATCTTGTTCAAAAAACAGAAAATGATCTTTTAAGAACCCCTAATTTTGGGCGTAAATCACTTAATGAAATTAAAGAAGTTCTAGGCCAAATGGGTCTTGAGCTTGGCATGAATGTTACTGGTTGGCCGCCTGAAAACATTGAAGAAATGGCCAAAAAAATTGAAGACCCATATTAA
PROTEIN sequence
Length: 339
VIQKNWQELIRPFKLNIDLLGSEHRRAQVVAEPLERGFGLTLGTALRRVLLSSLQGAAVTGLQIEGVQHEFSSIPGVHEDVTEIILNLKALSLRKHSEGAKKLRLKAEGPGIITAAQFEATSDIEILDPELVICVLDAGAKISMEVTVENGKGYVPAGQLRREDAPISFIPVDALFSPVRRVSYKVEDTRVGQRTDYDKLILDVETNGAVRPEDAVALASRILQDQLQQFINFEEPVAPEEKDQEAELPFSRALLKKVEELELSVRSANCLKNENIVYIGDLVQKTENDLLRTPNFGRKSLNEIKEVLGQMGLELGMNVTGWPPENIEEMAKKIEDPY*