ggKbase home page

SCNpilot_expt_500_p_scaffold_686_curated_10

Organism: scnpilot_dereplicated_Caedibacter_1

near complete RP 52 / 55 BSCG 51 / 51 MC: 1 ASCG 11 / 38 MC: 2
Location: 9041..12508

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.9
  • Coverage: 999.99
  • Bit_score: 2090
  • Evalue 0.0
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.9
  • Coverage: 999.99
  • Bit_score: 2090
  • Evalue 0.0
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 53.0
  • Coverage: 999.99
  • Bit_score: 1214
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Candidatus Caedibacter acanthamoebae → Caedibacter → Rickettsiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3468
ATGCAAATATTGAATCTAGATCATTTGATTAAAAATTCTTCTCATGTAACTTTAGGAGGTGTTCCAGAAGGGGCAGAAGCTTTTCTATTAAAAGAGATGCTCGCGCAAAAATCAGGCACTCCCTTTATCTACATTTGTCATCATGAATCTCATCTTAATGAACTTGAATCTACGCTTAGATTTTTGTGTCCTCAGCTAGACATATTAATATTCCCACCATGGGATTGTTTACCGTATGATCGAATGTCTCCTAAGCGAGATATTATTGGGGAACGAGTGACAACCTTGCTTCAACTCAATAAAGGTCTTGATAAACCAGCTCTTATTCTTACAACAATTCAAGCTTTTCTGCAGCGCGTGGCTCCTCAAGAAGTATTTAAAAATGCTGAACTTCATTTAAAAGGAGGGGCTCAATTTAATCTTAAGGATTTTGAGAGCTATTGTCATAAATATGGTTTTGTCCGTGTTTCAACAGTCCGAGAACCATCTGAATATGCTGTGCGCGGGGGAATTGTTGATCTTTTTCCGCCGAGTTCTGAGTATCCTTATCGTTTAGATCTTTTTGGGGATGAAATTGAGAGTATCAAAATGTTTGATCCACTCTCTCAACGAAGCTTAGAAAGTGTCAAAGAAATTGATCTAACGCCCAGTTGTGAAGTGTTGCTTGATGAAAAATCTATTGAAGCATTTCGGACTTCCTATCGTAAGGCTTTTGGACATACTGGAGAGAAGGATCCTCTTTATCAGGCGATTAGCGCCGGCCAAAGTTACGCGGGGATGGAGCATTGGCTTCCTTTATTTTATCCTCACCTTGAGACGCTCCTAGATTATGCTCCGGAGGCGATTTTAGTATTTGATGCTAAAGCCCTTGATACAGCAAAGGCTCAGCTTGAACTTATTCAAGAAAATTACCAAGCAAGAAAAGAGTTTGTGCATATTGGGGCTGATAATAGGCCTCCTTATTATCCGCTCTCACCAGAGCTATTGTATCTCTCTCTGGAGGAAGTCGAAAGGTACATTAGCCCCAAAACTGTTGTACATTTCTCGCCATTTCTTAAAGAAGGAAGCCCTCAATTAGAAGGCCGTATAGTGCAAGACTTTAGTGCTGCAAGAGCTCAACAAAATGTTAATCTTATTGATGCACTTAAGGAAAGAAGTGAGAGTTACATAAAAGCGCAAAAAAAGGTACTCTTCTCTTGTATGACCACAGGCTCCCGTTTAAGGCTCCAAGGTTTATTACAAGACCATGATTGTCAGGCTAACTTAATAGAATCATGGGCTGATTTTACGGCTTTGCCAGCTTCAATAATGGGAATTGCCTTGATTCCTTTAGAGCGTGGCTTTGAGTTTAAAGATTTTGTCCTGATCACAGAACAAGATATCTTTGGTGAACGTCAGAGCCAGCCCCTTAAAAGGAAGCGCCGTTCGGATCTTTTTATTGGAGAAGCATCAGCTCTCAATGAAGGTGATTATGTGGTGCACCAAGAGCATGGGATTGGGAAATTTCAAGGCCTTCAGACATTGCAAGTCGATAATCTTCCCCATGATTGTGTCAGTCTTATCTATGAAGGTGGTGATAAGCTTTTTGTTCCTGTTGAGAATTTAGAGATTCTTTCTCGATATGGAGGGGAAGATAGTATTGTGTCTCTCGATAAGCTTGGGAGTTCAGCCTGGCAGCATCGAAAGGCGCGCGTCAAGAAAAGACTTGAAGATATCGCTGAGCATCTGATCGCGCTTGCGGCTGAGCGTGCATTGCGAGTGGGAGAAATTTTTCAGCCTTCAGAAGGGCTTTATAACGAATTTTCTGCCCGCTTTCCTTATAATGAAACGGAAGATCAAGAGCGCGCTATTTTAGAAGTTTTACAAGACCTTGAATCTGGGAGGCCAATGGATCGCTTAATATGCGGTGATGTTGGATTTGGAAAGACAGAGGTGGCTTTACGCGCGGCTTTTGTCGTTGCATCAGCAGGTAAGCAAGTTGCGATCATTACACCAACGACTTTATTGTGTCGTCAACATTACCAAAATTTCCAGAAGCGTTTTGAAGGTTTCGGGCTTAAGGTTGCTCAATTATCACGACTTGTTTCAGCAAAAGAAGCTTCAGAAATTAAAGAAGGCCTAGAAAAAGGGCATATTGATTTGGTCGTGGGAACGCATGCGCTTTTTGCACAATCGACTCACTTTAAAAATTTGGGGCTCGTTATTGTTGATGAAGAGCAACATTTTGGCGTTAAGCAAAAAGAAAAACTTAAAGATCTACAAAAGGATGTTCATGTCCTAACGCTGACGGCAACGCCAATCCCACGGACGCTTCAGATGTCTTTAAGTGGCGTGAGAGACATGAGTATTATTGCAACGCCACCGATTGATCGTCTTGCTGTCAGGACTTTTGTGATGCCCTTTGATGAGATTGTGATGAGAGAAGCCTTGACACGTGAGTTCAATCGAGGAGGCCAAGTCTTTTATGTTTGTCCTCGTATTGAAGACCTTGAGAGCATTCGTGAAAAATTGAGAGCTTTGATGCCTGAGGCCAAAGTAGCTGTCGCTCATGGACAACTTGCGCCCACTATCCTTGAGAAGATTATGAATGATTTTTATGATCGCCATTACTCAATTTTGCTTTCAACCAATATTATTGAATCAGGCCTTGATATTCCGGCGGTCAATACGATTGTCATTCATCGGTCGGACCTTTTTGGGTTGGCCCAACTATATCAATTAAGAGGCCGTGTTGGGCGCTCTAAAACACGAGGATATGCTTATTTAACGATTCCTGATGTGATTACGCCAACGGCGCAGAAGCGTTTAGAAGTCATGCAGACGCTGGATACCCTTGGGGCTGGGTTTCAGTTGGCAAGTCATGACATGGATATTCGGGGGGCAGGAAATCTTTTGGGCCAGCAGCAATCAGGACATATTCGAGAGGTGGGTGTTGAGCTTTACCAACAAATGTTGCAAGACGCCGTTGAAACTGGGCGTCATAAGTCAACAGATTCTGTGGCTCAGTCGACAGCGGTATGGACGCCGCAAATTCATCTTGGCTTACCAATCTTGATTCCTGAAGAATATGTTGCCGATCTTTCAACGCGACTCACTCTTTACCGTCGTCTGTCGCATCTCGAGAATGAAGAAGAAATAGAAGCTTTTACGCTTGAGTTGCTGGATCGATTCGGGGTTTTACCTGAAGAAGTCAAGAACCTTTTAAGCGTACTGAGATTAAAACAGCTGTGTCGCCAAGTTGGGGTTGAAAAGATTGAAACCGGTGAGAAGGGGGCTATTTTTACCTTTTATAACAATACGTTCTCAAACCCTGTTGCACTTATTCAATTCATTCAAACACAAGCAGGAACTGTAAAACTTAGACCCGACCATAAGCTTGTTTTTTTGCGGATTTGGAAAGAGGCTCAAGAACGGGTAGAGGTGTGTGAGGAGATTCTAAAGGAATTGAAGAGGTTGGTATTACGTTAA
PROTEIN sequence
Length: 1156
MQILNLDHLIKNSSHVTLGGVPEGAEAFLLKEMLAQKSGTPFIYICHHESHLNELESTLRFLCPQLDILIFPPWDCLPYDRMSPKRDIIGERVTTLLQLNKGLDKPALILTTIQAFLQRVAPQEVFKNAELHLKGGAQFNLKDFESYCHKYGFVRVSTVREPSEYAVRGGIVDLFPPSSEYPYRLDLFGDEIESIKMFDPLSQRSLESVKEIDLTPSCEVLLDEKSIEAFRTSYRKAFGHTGEKDPLYQAISAGQSYAGMEHWLPLFYPHLETLLDYAPEAILVFDAKALDTAKAQLELIQENYQARKEFVHIGADNRPPYYPLSPELLYLSLEEVERYISPKTVVHFSPFLKEGSPQLEGRIVQDFSAARAQQNVNLIDALKERSESYIKAQKKVLFSCMTTGSRLRLQGLLQDHDCQANLIESWADFTALPASIMGIALIPLERGFEFKDFVLITEQDIFGERQSQPLKRKRRSDLFIGEASALNEGDYVVHQEHGIGKFQGLQTLQVDNLPHDCVSLIYEGGDKLFVPVENLEILSRYGGEDSIVSLDKLGSSAWQHRKARVKKRLEDIAEHLIALAAERALRVGEIFQPSEGLYNEFSARFPYNETEDQERAILEVLQDLESGRPMDRLICGDVGFGKTEVALRAAFVVASAGKQVAIITPTTLLCRQHYQNFQKRFEGFGLKVAQLSRLVSAKEASEIKEGLEKGHIDLVVGTHALFAQSTHFKNLGLVIVDEEQHFGVKQKEKLKDLQKDVHVLTLTATPIPRTLQMSLSGVRDMSIIATPPIDRLAVRTFVMPFDEIVMREALTREFNRGGQVFYVCPRIEDLESIREKLRALMPEAKVAVAHGQLAPTILEKIMNDFYDRHYSILLSTNIIESGLDIPAVNTIVIHRSDLFGLAQLYQLRGRVGRSKTRGYAYLTIPDVITPTAQKRLEVMQTLDTLGAGFQLASHDMDIRGAGNLLGQQQSGHIREVGVELYQQMLQDAVETGRHKSTDSVAQSTAVWTPQIHLGLPILIPEEYVADLSTRLTLYRRLSHLENEEEIEAFTLELLDRFGVLPEEVKNLLSVLRLKQLCRQVGVEKIETGEKGAIFTFYNNTFSNPVALIQFIQTQAGTVKLRPDHKLVFLRIWKEAQERVEVCEEILKELKRLVLR*