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SCNpilot_expt_500_p_scaffold_211_curated_117

Organism: scnpilot_dereplicated_Chlamydia_1

near complete RP 50 / 55 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 141134..144433

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.2
  • Coverage: 999.99
  • Bit_score: 2154
  • Evalue 0.0
mfd; transcription-repair-coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 61.5
  • Coverage: 999.99
  • Bit_score: 1377
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Parachlamydia acanthamoebae (strain UV7) RepID=F8KVV2_PARAV similarity UNIREF
DB: UNIREF100
  • Identity: 61.5
  • Coverage: 999.99
  • Bit_score: 1377
  • Evalue 0.0

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Taxonomy

Chlamydia sp. 'Rubis' → Chlamydia → Chlamydiales → Chlamydiia → Chlamydiae → Bacteria

Sequences

DNA sequence
Length: 3300
GTGGAGAATGGTGCTTTTGAAGGAATTCGGTTAGAGCAGTTAAAAGATGCTTTAAAAAACGATAATTCTATAGTCATTGAAGGCTTATGGAATTCTACAAAGGCACTAGTTTTATCATTAGCACAAAAAGTTACCGGGAAAAATATCCTCATTTTAACAGGCGCAAGTGTTGAGGAATTGCGACTATTTAATGATTTCCCCTACTTTTTTGAGCGGACAATTATTGATTTTCCCGCTTGGGAAACGCTCCCTTCTGAAAAAATTGCACCAAGTCCCGATGTTGTTGGAGAAAGATACACAGCTTTAAAAAATCTGTTAAATGCGCATGGTTCCACTATCATTTTAAGTAGTGTCCAGGCCATTTTACAAAAACTAATACCCCCTAGCAAATTTTCAACATCCTACCTTTCTTTACAAACCGGGCAAACGCATTCATTTGAAACGTTGGTCAAAAAATTACAAGAAATGGGGTATCAAAAAAAATCGGTTGCTTCTGACAAAGGAGAAATGGCTTTAAGGGGCGGTATTATCGATATTTTTCCAGTCTCTTCTCCAGATCCTTTCCGCATTGAATTTTGGGGAGATGAGATAGAATCAATTAGAACTTTCGACCCCATTGGCCAAAAATCTATTCAAGTTTGTAAAGAGTGTGACATAACCGCTGCTTTAGAATTAGAATTAATAAACCAAGAAGAACAATTAGCCAATATTTTAGATTACCTAGGTCCTCAAACTATTGTCGTTTTTGACGACCTCTTAGCCATTGAAGATCGATACACTTCCCTAATTAATATTTTAGGACAAGCCCCGAGAACTTTTTTATCTTTTGAAAACTTTTTAGATCGATGTGCCCCTTTACAAAAGATTTACTTAAGCCATGAAGCCATTGACGAATTAAGTGAAGTGCGTGTAAAAAATTCTTCCCAAAATCAACATTATTATTCAAATCAAAGCCCTTTATATACTTTGACTTTTCAAATGTTTGGCAAAGAACTTGAAGCTGAACGTTGGAATCACCCATTTATTCCCATTTCTTCTTTTTTAGTGCCAGAAGAGACTGATAGTCAGGTTATTACTGGACAAGATCTTTTAAATAACTTATCTCGTCTTACCAATTCTAATTTTCAGACTATTTTTTTAAGTACTCATGAAACAGAACAGCAACAATTTAAAAAAAGAATTGAAGAAGCCTCTTATCAATTACCCAATAACACAACTTTTCAAATTGGCTATTTATCAAGCGGATTTGTGAATCCAGATTCTGAGCTTATAATTTTTCCATACACTGAAATCACAAAAAGATACAAATTAAGACGCCAAAAACAAAGAAGCACTTATCACGCACCAGTCGTTGAAATGTATGACTTACATCCAGGAGATATAGTTGTCCATTCAAACAACGGCATAGCCAAATATTTAGGCATAGAAAAAAAGCCAAATCATCTTGGCAACGAAAGCGAATTTTTTTCACTCGAATATGCTGATCAAGCCAAACTATACGTACCTTTAAATCAAGCTCATTTAGTTAGTAAATATATTGGCGCCAGTGAAGAAATCCCCAAATTAAATTCACTTGGAAATACAAAGTGGAAAAAAACCAAAGAATTAACAGAAAAAGCAATTTTAGGTTACGCTTCTCAGTTGCTTGATCTTTATGCCAAACGATCTTTAAAACCAGGTTATGTCTATCCAGAAGATTCTTTTGATGTAAAAAGTTTTGAGGAAGAATTTCCTTTTGTAGAAACGGAAGATCAATTAGAAGCTGTTCGCAATATCAAGCAAGATATGCAATCTGCCAAAAATATGGATCGTTTAGTTTGTGGGGATGTTGGCTATGGCAAAACGGAAGTCGCCATGCGCGCGGCTTTTAAAGCTGTCGTTGACGGGCATAAACAAGTGGCCATACTTGTGCCTACCACTGTTCTTGCCATGCAGCATTATGAAAATTTTTGTGATAGGATGGCAAACTTTCCGATTCGTATAGGGGTTTTATCCCGCTTTAGAACTTCCAAACAAACTAAAGAAACTTTAAAAGAGCTTGCGGAAGGATCGCTTGATATTATTATTGGCACACATCGTTTGATTGGTTCTGATGTTGTATTTAAAGATTTAGGTTTGATCATCATTGATGAAGAGCAAAGATTTGGAGTTAAAGCCAAGGAGCATTTAAAACAAGTTAAAATTGGCGTCGATTGCCTCACTCTTTCTGCAACCCCAATTCCTCGCACTTTATATATGTCCTTGATTGGGGCAAGAGATATGTCCGTTATAAGCACCCCTCCGCAAGATCGCCTTCCCATTACAACACTGCTAACAGACTCCAACGAACAAACCATAAAAACAGCTCTTTTAAGAGAACTTGCAAGAGATGGACAAGCCTACTTTATTCACAATAGAGTAGAAACTATTTTTGAAGTGGCTGACAAATTAAAAAAAATGCTTCCCCAAGCCAAAATTGTTGTGGCACATGGTCAAATGAGTAGTAATGAAATAGATTTGGCTTTTCACTCGTTTAAAAATGGGCAAGCTAATATTTTAGTCGCAACAACCATAGTCGAAAGTGGTATTGATATTCCAAACGCGAATACAATATTAATCGACCGCGCTGACACCTTTGGCTTAGCGGATTTATATCAATTAAGAGGAAGAGTTGGTCGCTGGATTAGAAAAGCTTATGCTTACTTTTTGGTAAAAAATTTAAGATCATTATCTGAAATGGCAAGAAAACGATTAAATGCGTTAATTGGAACTTCAGGTTATGGCGGTGGCATGAAAATTGCTATGAGAGATTTAGAAATTAGAGGTGCTGGGAATATAATAGGAACAGAACAATCAGGGCATGTATCAGAAGTTGGTTACCACTTATACTGTAAATGGCTGAAAAGAGCCATTTTGGCTTTAGAAGGGAAAATTCCAAGCACTTTAGTTGATACAAAATTAGAATTCCCCTCTATTGACTACGGAATCCCAGAAAAGTACATAAACGAAAGCAATTTACGAAAAGAAATTTACCATCGTTTGGGAGAAGCTATTGAACCGGAAGAGATCGATACTATTTGGTCAGAATTACAAGATAGATTTGGAACCCCTCCTTTACAAACCAAATGGCTTTATCATTTATCTAAAGTAAAAGTACATGCATCACGTCATGGCTTTTTACTCTTGCGACAGGATAAATTATCTCTGACTATGGAAAAGAAAAAGGGTGGAGATGTTCAAACCAAAAAAATCTTGTTAAAACCTTTCAAAACGCCTCAAGAATTAGAAGATAAACTCATGCAAGCCATGAAAAGTTTTTAG
PROTEIN sequence
Length: 1100
VENGAFEGIRLEQLKDALKNDNSIVIEGLWNSTKALVLSLAQKVTGKNILILTGASVEELRLFNDFPYFFERTIIDFPAWETLPSEKIAPSPDVVGERYTALKNLLNAHGSTIILSSVQAILQKLIPPSKFSTSYLSLQTGQTHSFETLVKKLQEMGYQKKSVASDKGEMALRGGIIDIFPVSSPDPFRIEFWGDEIESIRTFDPIGQKSIQVCKECDITAALELELINQEEQLANILDYLGPQTIVVFDDLLAIEDRYTSLINILGQAPRTFLSFENFLDRCAPLQKIYLSHEAIDELSEVRVKNSSQNQHYYSNQSPLYTLTFQMFGKELEAERWNHPFIPISSFLVPEETDSQVITGQDLLNNLSRLTNSNFQTIFLSTHETEQQQFKKRIEEASYQLPNNTTFQIGYLSSGFVNPDSELIIFPYTEITKRYKLRRQKQRSTYHAPVVEMYDLHPGDIVVHSNNGIAKYLGIEKKPNHLGNESEFFSLEYADQAKLYVPLNQAHLVSKYIGASEEIPKLNSLGNTKWKKTKELTEKAILGYASQLLDLYAKRSLKPGYVYPEDSFDVKSFEEEFPFVETEDQLEAVRNIKQDMQSAKNMDRLVCGDVGYGKTEVAMRAAFKAVVDGHKQVAILVPTTVLAMQHYENFCDRMANFPIRIGVLSRFRTSKQTKETLKELAEGSLDIIIGTHRLIGSDVVFKDLGLIIIDEEQRFGVKAKEHLKQVKIGVDCLTLSATPIPRTLYMSLIGARDMSVISTPPQDRLPITTLLTDSNEQTIKTALLRELARDGQAYFIHNRVETIFEVADKLKKMLPQAKIVVAHGQMSSNEIDLAFHSFKNGQANILVATTIVESGIDIPNANTILIDRADTFGLADLYQLRGRVGRWIRKAYAYFLVKNLRSLSEMARKRLNALIGTSGYGGGMKIAMRDLEIRGAGNIIGTEQSGHVSEVGYHLYCKWLKRAILALEGKIPSTLVDTKLEFPSIDYGIPEKYINESNLRKEIYHRLGEAIEPEEIDTIWSELQDRFGTPPLQTKWLYHLSKVKVHASRHGFLLLRQDKLSLTMEKKKGGDVQTKKILLKPFKTPQELEDKLMQAMKSF*