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scnpilot_p_inoc_scaffold_1995_curated_1

Organism: scnpilot_dereplicated_Hydrogenophaga_1

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38
Location: comp(2..316)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Cupriavidus sp. WS RepID=UPI00036F648B similarity UNIREF
DB: UNIREF100
  • Identity: 72.4
  • Coverage: 105.0
  • Bit_score: 160
  • Evalue 1.30e-36
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:CDY77133.1}; RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KDR41946.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.4
  • Coverage: 105.0
  • Bit_score: 156
  • Evalue 1.60e-35
FecI-like sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 70.5
  • Coverage: 105.0
  • Bit_score: 151
  • Evalue 1.10e-34

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Taxonomy

Burkholderia glathei → Burkholderia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 315
ATGAACGATCACACCCTGGACAGCTTCCTGCGCCTGCGGCCCCGGCTGCGGGGCATCGCCTACCGCATGCTGGGCTCGGCCGCCGACGCCGACGAGGTGGTGCAGGACGCCTGGCTGCGCTGGCACGGCACCGAGCACGCGTCGGTGGACAACGCCGAGGCCTGGCTGGTCTCCGTCACCACGCGCCTGGCCATCGACCGGCTGCGCGCGGCCCAGTCGCGGCGCGAGCAGTACGTGGGCACCTGGCTGCCCGAGCCCATCCTCACCGAGGCCGAGGCGCCGCACACGCCCGAGCAGATGCTGGAGCGGGCCGAC
PROTEIN sequence
Length: 105
MNDHTLDSFLRLRPRLRGIAYRMLGSAADADEVVQDAWLRWHGTEHASVDNAEAWLVSVTTRLAIDRLRAAQSRREQYVGTWLPEPILTEAEAPHTPEQMLERAD