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scnpilot_dereplicated_Hydrogenophaga_1

scnpilot-dereplicated_Hydrogenophaga_sp__PBC_70_1
In projects: scnpilot-dereplicated  |  SCNpilot_P_inoc

Consensus taxonomy: Hydrogenophaga sp. PBC  →  Hydrogenophaga  →  Burkholderiales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 201-250 of 428 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_4432_curated
Species: Hydrogenophaga sp. PBC (100%)
6 8230 bp 68.01 1.00 96.96
scnpilot_p_inoc_scaffold_4408_curated
Species: Hydrogenophaga sp. PBC (72.73%)
11 8163 bp 69.66 1.00 92.76
scnpilot_p_inoc_scaffold_4457_curated
Species: Hydrogenophaga sp. PBC (100%)
8 8137 bp 69.44 1.00 93.17
scnpilot_p_inoc_scaffold_4665_curated
Species: Hydrogenophaga sp. PBC (100%)
10 7949 bp 68.70 1.00 93.07
scnpilot_p_inoc_scaffold_11309_curated
Species: Hydrogenophaga sp. PBC (100%)
9 7874 bp 71.29 1.00 86.72
scnpilot_p_inoc_scaffold_4704_curated
Species: GWE1_Thiobacillus_62_9_curated (63.64%)
11 7811 bp 62.91 1.00 87.45
scnpilot_p_inoc_scaffold_4779_curated
Species: Hydrogenophaga sp. PBC (90.91%)
11 7805 bp 71.49 1.00 92.90
scnpilot_p_inoc_scaffold_4875_curated
Phylum: Proteobacteria (88.89%)
9 7613 bp 61.22 1.00 86.97
scnpilot_p_inoc_scaffold_4972_curated
Species: Hydrogenophaga sp. PBC (100%)
6 7605 bp 69.80 1.00 91.44
scnpilot_p_inoc_scaffold_4924_curated
Species: Hydrogenophaga sp. PBC (100%)
15 7581 bp 65.97 1.00 91.41
scnpilot_p_inoc_scaffold_4990_curated
Species: Hydrogenophaga sp. PBC (100%)
9 7567 bp 70.13 1.00 97.33
scnpilot_p_inoc_scaffold_11994_curated
Species: Hydrogenophaga sp. PBC (88.89%)
9 7566 bp 69.79 1.00 89.18
scnpilot_p_inoc_scaffold_4971_curated
Species: Hydrogenophaga sp. PBC (100%)
5 7532 bp 71.42 1.00 92.13
scnpilot_p_inoc_scaffold_5073_curated
Species: Hydrogenophaga sp. PBC (100%)
2 7475 bp 75.96 1.00 99.93
scnpilot_p_inoc_scaffold_5102_curated
Species: Hydrogenophaga sp. PBC (100%)
4 7452 bp 72.02 1.00 94.57
scnpilot_p_inoc_scaffold_6148_curated
Order: Burkholderiales (80%)
5 7412 bp 70.22 1.00 88.84
scnpilot_p_inoc_scaffold_5222_curated
Species: Hydrogenophaga sp. PBC (90%)
10 7341 bp 71.67 1.00 98.04
scnpilot_p_inoc_scaffold_5178_curated
Species: Hydrogenophaga sp. PBC (100%)
9 7333 bp 70.72 1.00 96.43
scnpilot_p_inoc_scaffold_5208_curated
Species: Hydrogenophaga sp. PBC (100%)
9 7330 bp 71.98 1.00 93.68
scnpilot_p_inoc_scaffold_5199_curated
Species: Hydrogenophaga sp. PBC (100%)
8 7303 bp 67.21 1.00 84.95
scnpilot_p_inoc_scaffold_9500_curated
Species: Hydrogenophaga sp. PBC (100%)
6 7290 bp 70.82 1.00 96.30
scnpilot_p_inoc_scaffold_5339_curated
Genus: Acidovorax (50%)
8 7231 bp 71.84 1.00 95.84
scnpilot_p_inoc_scaffold_5351_curated
Species: Bradyrhizobium sp. CCGE-LA001 (55.56%)
9 7229 bp 72.04 1.00 96.07
scnpilot_p_inoc_scaffold_5915_curated
Species: Hydrogenophaga sp. PBC (100%)
7 7216 bp 69.12 1.00 93.25
scnpilot_p_inoc_scaffold_5325_curated
Species: Hydrogenophaga sp. PBC (88.89%)
9 7210 bp 67.66 1.00 91.75
scnpilot_p_inoc_scaffold_5370_curated
Species: Hydrogenophaga sp. PBC (100%)
6 7201 bp 69.67 1.00 93.15
scnpilot_p_inoc_scaffold_5427_curated
Species: Hydrogenophaga sp. PBC (100%)
4 7166 bp 70.18 1.00 96.50
scnpilot_p_inoc_scaffold_5431_curated
Species: Hydrogenophaga sp. PBC (60%)
10 7136 bp 72.84 1.00 89.00
scnpilot_p_inoc_scaffold_5510_curated
Species: Hydrogenophaga sp. PBC (100%)
6 7077 bp 70.52 1.00 93.30
scnpilot_p_inoc_scaffold_5499_curated
Species: Hydrogenophaga sp. PBC (50%)
4 7058 bp 67.61 1.00 94.57
scnpilot_p_inoc_scaffold_5567_curated
Species: Hydrogenophaga sp. PBC (87.5%)
8 7044 bp 72.35 1.00 95.61
scnpilot_p_inoc_scaffold_5535_curated
Species: Hydrogenophaga sp. PBC (88.89%)
9 7034 bp 70.13 1.00 93.23
scnpilot_p_inoc_scaffold_9824_curated
Species: Hydrogenophaga sp. PBC (57.14%)
7 6982 bp 73.03 1.00 96.72
scnpilot_p_inoc_scaffold_5613_curated
Species: Hydrogenophaga sp. PBC (83.33%)
6 6946 bp 72.20 1.00 95.88
scnpilot_p_inoc_scaffold_5635_curated
Species: Hydrogenophaga sp. PBC (100%)
8 6882 bp 68.92 1.00 95.82
scnpilot_p_inoc_scaffold_8549_curated
Species: Hydrogenophaga sp. PBC (85.71%)
7 6873 bp 71.99 1.00 95.94
scnpilot_p_inoc_scaffold_5837_curated
Species: Hydrogenophaga sp. PBC (100%)
7 6790 bp 67.86 1.00 94.46
scnpilot_p_inoc_scaffold_5806_curated
Species: Hydrogenophaga sp. PBC (83.33%)
6 6765 bp 72.71 1.00 94.72
scnpilot_p_inoc_scaffold_5900_curated
Species: Hydrogenophaga sp. PBC (77.78%)
9 6755 bp 70.07 1.00 95.44
scnpilot_p_inoc_scaffold_5957_curated
Species: Hydrogenophaga sp. PBC (100%)
6 6719 bp 69.30 1.00 92.96
scnpilot_p_inoc_scaffold_5965_curated
Species: Hydrogenophaga sp. PBC (100%)
8 6701 bp 72.96 1.00 93.30
scnpilot_p_inoc_scaffold_6297_curated
Species: Hydrogenophaga sp. PBC (100%)
4 6674 bp 68.00 1.00 96.28
scnpilot_p_inoc_scaffold_6000_curated
Order: Burkholderiales (75%)
8 6628 bp 71.09 1.00 93.60
scnpilot_p_inoc_scaffold_9095_curated
Phylum: Proteobacteria (66.67%)
6 6621 bp 68.19 1.00 77.84
scnpilot_p_inoc_scaffold_5966_curated
Species: Hydrogenophaga sp. PBC (100%)
7 6607 bp 69.08 1.00 82.78
scnpilot_p_inoc_scaffold_6062_curated
Species: Hydrogenophaga sp. PBC (100%)
7 6603 bp 70.33 1.00 96.00
scnpilot_p_inoc_scaffold_6073_curated
Order: Burkholderiales (57.14%)
7 6599 bp 69.83 1.00 97.83
scnpilot_p_inoc_scaffold_6154_curated
Species: Hydrogenophaga sp. PBC (100%)
7 6565 bp 72.31 1.00 94.50
scnpilot_p_inoc_scaffold_6161_curated
Species: Hydrogenophaga sp. PBC (66.67%)
6 6552 bp 69.00 1.00 96.34
scnpilot_p_inoc_scaffold_6097_curated
Order: Burkholderiales (85.71%)
7 6504 bp 70.66 1.00 92.85
Displaying items 201-250 of 428 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.