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SCNpilot_expt_1000_bf_scaffold_2528_curated_18

Organism: scnpilot_dereplicated_Mesorhizobium_2

near complete RP 45 / 55 MC: 1 BSCG 45 / 51 ASCG 11 / 38 MC: 2
Location: comp(18097..21624)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.1
  • Coverage: 999.99
  • Bit_score: 2066
  • Evalue 0.0
transcription repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 88.3
  • Coverage: 999.99
  • Bit_score: 2046
  • Evalue 0.0
  • rbh
Transcription-repair-coupling factor n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y8K4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.6
  • Coverage: 999.99
  • Bit_score: 2055
  • Evalue 0.0

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Taxonomy

Mesorhizobium sp. SOD10 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3528
ATGTATCCGTCTGACTGCCAGCATTCGAAAAGCACTTTCATGAGCCTCATTCCAAAAATCGGCCTGCCGAACTCCGGCCTTGGCTCGTTCATCGTCGACGGCGTTGCCGACGGCTACGAGGCGTTTGCGATTGCGCAGGTCATCAAGGAAGCCAGCCCGGATGGCCCGCTTCTGTTCGTGGCCCGCGACGGCCAGCGCCTGCCGGCCATCGTCGAGGCGCTGTCTTTCGTCTCGCCCGGCCTGCCGGTGCTGGAACTGCCGGCCTGGGACTGCCTGCCCTATGATCGTGTGTCGCCCGGTTCCGAGGTCGCCGCCCGCCGTCTCGATGCGTTGACCGCCATGATCGCGCTCGCCGCCAAGCCGCACCGCGCCGTCATCCTCACCACCGCCAATGCGCTTTTGCAGCGCATTCCGCCCGCCGATCTGGTCGAGGCGCAGACTTTCCATGCCAAGCCCGGCAACCAGATCGACATGAACAGGCTGGTGGCGCGGCTCGAAACCTCCGGCTTCGAGCGGGTTCCGACCGTGCGCGGCGTCGGCGAATTCGCCGTCCGTGGTGGCATCCTCGATCTTTACGCGCCGGGCTGGAGCGAAGCGCTGCGGCTCGATTTCTTCGGCGATACGCTGGAATCGATCCGCGCCTTCGATGTCGCCAGCCAGCGCACCACGGGCCAGCGCCACGCCATGTCCTTGCAGGCGATGAGCGAGGTGGCGCTGACGCCAGAAACCATCAGCCGTTTTCGCCGCGCCTATATCGAGGCCTTCGGCGCGCCGTCGCGCGATGACGGGCTTTACGCGGCCGTCAGCGAAGGCCGCCGCTTTGCCGGCATGGAACACTGGCTGCCGCTGTTTTACGAGCGGCTTGAGACGGTGTTCGACTATCTGCCGGACGTGCCTGTGGTGTTCGACCACCTTACGCATGAATCGCTTGCCGAGCGCCACAAGCTGATCCTCGACCACTACGAGGCGCGCAAGGCACAGGCCGGCGGCGCGCTGAAGGAAGCGGTGCCCTACAAGCCGGTCGAGCCGTCACGCATGTATCTGTCGACGGACGATGTCTCGGCCTCGCTGCAGGATCGCCTCGCCATTGAGTTCACGCCCTTCGACGCCCCCGATGCCGGCGGGCGCAAGATGTTCCATGGCGGTTCGCGCGCCGGTCGCAGCTTTGCCGAGGAGCGCGCCGATCCCAACGCCAATGTCTTCGACGTGGTGGTCAGGCACATTGCCGAGGAACGCGCCAAAAAGCGCCGCGTCGTCGTTGCGGGCTGGACCGAAGGCTCGCTCGACCGGCTGACCCAGATCCTCGACGAACATCATCTTGGCGGATTGAAGCCGGTCGCAACGCTGGCCGATGTGGAAAAGCTCGAGGCAGGGCAGGCGGGTCTTGCCGTGCTGCCGCTCGAAACCGGCTTCGAGACAGACGAACTGGTGGTCGTCGCCGAACAGGACATTCTGGGCGACCGCCTTATCCGCCGCTCCAAGCGCAAGAAGAAGGCGTCCGATTTCATTGCCGAGGCGGCGTCGCTGTCGTCCGGCGACATTGTCGTGCACGCCGATCACGGCATCGGCCGCTTCATCGGCCTGAAGACCATACAGGCCGTGGGTGCGCCGCACGATTGCCTCGAAATCCACTATGCGGGCGACGACCGCCTGTTCCTTCCGGTCGAAAACATCGAGCTTCTGTCGCGTTACGGCTCCGACTCCGCCGAAGCAACGTTGGACAAGCTTGGCGGCGGCGCATGGCAGGCTCGCAAGGCACGGCTTAAGAAGCGCCTGCTCGACATGGCCGGCCAGTTGATCCGAATAGCTGCCGAGCGCCAGATGCGCGCCGCCCCCGCGATGATCCCCGCCGATGGCCTCTATGGCGAGTTTGCCGCTAGATTCCCCTACGAGGAGACCGACGACCAGCAGACGGCCATCGATTCCGTCATGGAAGACCTCTCCGCCGGCAGGCCGATGGATCGGCTGGTCTGCGGCGACGTCGGCTTCGGCAAGACCGAGGTCGCGCTGCGCGCCGCCTTCATAGCCGCCATGGAAGGCTTCCAGGTTGCCGTCGTCGTGCCAACCACGCTTTTGTCGCGCCAGCATTTCAAGACCTTCTCGCAGCGCTTTTCCGGACTGCCGGTGCGCGTTGCCCAGGCTTCGCGGCTGGTCGGTGCCAAGGAACTGGCCGAGACCAAGAAGGCCGTCGCCGAAGGCACAATTGACATCGTCGTCGGCACCCATGCGCTGCTTGGCTCGTCGATTTCGTTCAAGCGGCTGGGCCTGCTCATCATCGACGAGGAGCAGCACTTCGGCGTCAAGCACAAGGAGCGGCTGAAGGAACTGAAGAGCGACGTGCATGTGCTGACGCTCTCGGCCACGCCGATTCCTCGGACCTTGCAACTGGCTCTGACCGGCGTGCGCGAACTTTCGCTGATCGCGACGCCTCCAGTGGATCGCATGGCGGTGCGCACCTTCATCTCGCCCTTCGATCCGCTCGTCATCCGCGAAACGCTGCTGCGCGAACGCTATCGCGGCGGGCATTCCTTCTACGTGGTGCCGCGCATCAGCGATCTTTCCGAAATTCAGGATTTCCTGCGCGACAATGTGCCGGAACTGAAAGTTGCCGTCGCCCACGGCCAGATGCCGCCCGGCGAACTCGACGACATCATGAACGCCTTCTATGACGGCCAGTACGATGTGCTTTTGTCCACCACAATCGTCGAATCCGGCCTCGATATTCCGACCGCCAACACGCTGATCATCCACCGCGCCGATATGTTCGGCCTGGCCCAGCTCTACCAGTTGCGCGGCCGCGTCGGGCGCTCGAAGGTGCGCGCCTATGCGCTGTTCACGCTGCCGGCGCGCAAGAAGCTGACCGACACCGCCGATCGCCGCCTGAAAGTGCTGCAATCGCTGGACACGCTGGGCGCAGGCTTCCAGCTTGCCAGCCACGACCTCGACATTCGCGGTGCCGGCAATTTGCTTGGCGAGGAACAGTCCGGTCATATCAAGGAAGTCGGCTTCGAGCTTTACCAGCAGATGCTGGAGGAGGCTGTCGCCGAGGTGAAGGACAGCGGCGAGGTGCAGGATGGCGGCTGGTCGCCGCAGATCGCGGTCGGCACGGCAGTGATGATCCCGGAAGGCTACGTGCCGGACCTGCAACTCAGGCTCGCGCTCTACCGCCGTCTGGGCGATCTCGAAACGCCGGAAGAGATCGATGCCTTCGGCGCGGAACTGATCGACCGCTTTGGTCCGCTGCCCGACGAGGTCAAGCACCTGTTGAAGATCGTCTTCATCAAGGCGCTCTGCCGCAAGGCCAATGTCGAAAAACTCGATGCCGGTCCGAAGGGTGTCGTCATTCATTTCCGCAAGCGCGAGTTTTCGAACCCGGCGGGTCTGGTCAGGTTCATCTCGGAACAGGGCTCGATGGCCAAGATCAGGCCGGATCAGTCGGTCGTATTCATCCGCGACTGGCCGAATTCGGACAAGCGGCTGGCCGGTTCCGCCGTTATCATGACGCAACTGGCCAAGCTGGCGGCTTGA
PROTEIN sequence
Length: 1176
MYPSDCQHSKSTFMSLIPKIGLPNSGLGSFIVDGVADGYEAFAIAQVIKEASPDGPLLFVARDGQRLPAIVEALSFVSPGLPVLELPAWDCLPYDRVSPGSEVAARRLDALTAMIALAAKPHRAVILTTANALLQRIPPADLVEAQTFHAKPGNQIDMNRLVARLETSGFERVPTVRGVGEFAVRGGILDLYAPGWSEALRLDFFGDTLESIRAFDVASQRTTGQRHAMSLQAMSEVALTPETISRFRRAYIEAFGAPSRDDGLYAAVSEGRRFAGMEHWLPLFYERLETVFDYLPDVPVVFDHLTHESLAERHKLILDHYEARKAQAGGALKEAVPYKPVEPSRMYLSTDDVSASLQDRLAIEFTPFDAPDAGGRKMFHGGSRAGRSFAEERADPNANVFDVVVRHIAEERAKKRRVVVAGWTEGSLDRLTQILDEHHLGGLKPVATLADVEKLEAGQAGLAVLPLETGFETDELVVVAEQDILGDRLIRRSKRKKKASDFIAEAASLSSGDIVVHADHGIGRFIGLKTIQAVGAPHDCLEIHYAGDDRLFLPVENIELLSRYGSDSAEATLDKLGGGAWQARKARLKKRLLDMAGQLIRIAAERQMRAAPAMIPADGLYGEFAARFPYEETDDQQTAIDSVMEDLSAGRPMDRLVCGDVGFGKTEVALRAAFIAAMEGFQVAVVVPTTLLSRQHFKTFSQRFSGLPVRVAQASRLVGAKELAETKKAVAEGTIDIVVGTHALLGSSISFKRLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLALTGVRELSLIATPPVDRMAVRTFISPFDPLVIRETLLRERYRGGHSFYVVPRISDLSEIQDFLRDNVPELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANTLIIHRADMFGLAQLYQLRGRVGRSKVRAYALFTLPARKKLTDTADRRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKDSGEVQDGGWSPQIAVGTAVMIPEGYVPDLQLRLALYRRLGDLETPEEIDAFGAELIDRFGPLPDEVKHLLKIVFIKALCRKANVEKLDAGPKGVVIHFRKREFSNPAGLVRFISEQGSMAKIRPDQSVVFIRDWPNSDKRLAGSAVIMTQLAKLAA*