ggKbase home page

SCNpilot_expt_1000_bf_scaffold_864_curated

Search features with annotation key words

Displaying items 61-90 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_864_curated_61
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

60166..60363
DNA (198bp) protein (66aa)
Endonuclease 8 1 {ECO:0000313|EMBL:KJL25371.1}; EC=3.2.2.- {ECO:0000313|EMBL:KJL25371.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
DNA glycosylase (EC:3.2.2.-)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036F4685
SCNpilot_expt_1000_bf_scaffold_864_curated_62
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

60444..60893
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00031A4AE6
Transferase {ECO:0000313|EMBL:KDA07009.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
SCNpilot_expt_1000_bf_scaffold_864_curated_63
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(60984..61643)
DNA (660bp) protein (220aa)
hypothetical protein n=2 Tax=Microbacterium barkeri RepID=UPI00031DF249
Oxygen regulatory protein NreC {ECO:0000313|EMBL:KJQ53991.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_864_curated_64
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(61640..62791)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K2C0_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EQM73358.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_864_curated_65
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

62990..64606
DNA (1617bp) protein (539aa)
Putative stress-responsive transcriptional regulator n=1 Tax=Microbacterium sp. TS-1 RepID=U2XCP0_9MICO
PspC domain protein {ECO:0000313|EMBL:KJQ53989.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
stress-responsive transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_864_curated_66
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

64603..64989
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0003074DFB
Uncharacterized protein {ECO:0000313|EMBL:KJL29872.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
SCNpilot_expt_1000_bf_scaffold_864_curated_67
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(65065..65331)
DNA (267bp) protein (89aa)
membrane protein n=1 Tax=Glaciibacter superstes RepID=UPI0003B5CC61
Uncharacterized protein {ECO:0000313|EMBL:KJL32409.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_864_curated_68
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

65607..66287
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SCA0_NOCSJ
Uncharacterized protein {ECO:0000313|EMBL:CCH77283.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_864_curated_69
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

66362..67099
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002FB0B4B
Uncharacterized protein {ECO:0000313|EMBL:EQM73360.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_864_curated_70
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(67181..68200)
DNA (1020bp) protein (340aa)
ATPase AAA n=1 Tax=Agromyces italicus RepID=UPI0003B5FF04
ATP-dependent Clp protease ATP-binding subunit ClpC {ECO:0000313|EMBL:KJL32406.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
ATPase with chaperone activity, ATP-binding subunit; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC
SCNpilot_expt_1000_bf_scaffold_864_curated_71
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(68197..69705)
DNA (1509bp) protein (503aa)
ATPase AAA n=1 Tax=Agromyces italicus RepID=UPI0003B5FF04
ATP-dependent Clp protease ATP-binding subunit ClpC {ECO:0000313|EMBL:KJL32406.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
ATPase with chaperone activity, ATP-binding subunit; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC
SCNpilot_expt_1000_bf_scaffold_864_curated_72
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

70188..70481
DNA (294bp) protein (98aa)
GMP synthase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349CFD3
GMP synthase {ECO:0000313|EMBL:EYT60111.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
SCNpilot_expt_1000_bf_scaffold_864_curated_73
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(70506..70964)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003463B6C
Glutaminase {ECO:0000313|EMBL:KDA07004.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
glutaminase
SCNpilot_expt_1000_bf_scaffold_864_curated_74
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(70981..71616)
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034AD426
NADPH-dependent FMN reductase {ECO:0000313|EMBL:KJL24843.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_864_curated_75
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

71861..72130
DNA (270bp) protein (90aa)
Plasmid stabilization system protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XN46_9MICO
Plasmid stabilization system protein {ECO:0000313|EMBL:GAD34332.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
plasmid stabilization system protein
SCNpilot_expt_1000_bf_scaffold_864_curated_76
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

72177..72719
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034C4AA6
DNA-binding ferritin-like protein {ECO:0000313|EMBL:CDK01827.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
DNA-binding ferritin-like protein; K04047 starvation-inducible DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_864_curated_77
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

72892..73755
DNA (864bp) protein (288aa)
formyltetrahydrofolate deformylase (EC:3.5.1.10)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0003222328
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_864_curated_78
Gordonia aichiensis, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

73814..74386
DNA (573bp) protein (191aa)
NADPH-dependent FMN reductase id=7719751 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:GAC48251.1}; TaxID=1220583 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia aichiensis NBRC 108223.;"
NADPH-dependent FMN reductase
SCNpilot_expt_1000_bf_scaffold_864_curated_79
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(74403..75461)
DNA (1059bp) protein (353aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000325B873
Contig_15, whole genome shotgun sequence {ECO:0000313|EMBL:KIP92147.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
SCNpilot_expt_1000_bf_scaffold_864_curated_80
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

75640..76569
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000307FE12
Contig_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIP95431.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_864_curated_81
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

76796..77116
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002DA2AC8
Uncharacterized protein {ECO:0000313|EMBL:KJL28005.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
isoleucyl-tRNA synthetase
SCNpilot_expt_1000_bf_scaffold_864_curated_82
unknown

Not on your lists

comp(77138..77449)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_864_curated_83
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(77446..78330)
DNA (885bp) protein (295aa)
Putative oxidoreductase YghA {ECO:0000313|EMBL:KJQ53978.1}; EC=1.-.-.- {ECO:0000313|EMBL:KJQ53978.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
short-chain dehydrogenase/reductase SDR; K00540 [EC:1.-.-.-]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034BC830
SCNpilot_expt_1000_bf_scaffold_864_curated_84
unknown

Not on your lists

78506..78742
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_864_curated_85
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(78776..79129)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KGW4_9MICO
ATP-dependent DNA ligase
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_864_curated_86
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

79194..79505
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002DA2AC8
Uncharacterized protein {ECO:0000313|EMBL:KJL18661.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
isoleucyl-tRNA synthetase
SCNpilot_expt_1000_bf_scaffold_864_curated_87
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

79620..79784
DNA (165bp) protein (55aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KES1_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KJL34221.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_864_curated_88
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(80706..81383)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0003765E05
Uncharacterized protein {ECO:0000313|EMBL:KJQ56116.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_864_curated_89
unknown

Not on your lists

comp(81386..81508)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_864_curated_90

Not on your lists

81673..82101
DNA (429bp) protein (143aa)
CBS domain n=1 Tax=uncultured organism RepID=T1WD34_9ZZZZ
CBS domain {ECO:0000313|EMBL:AGU12090.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
Displaying items 61-90 of 92 in total

View Taxonomy