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SCNpilot_cont_300_bf_scaffold_790_curated_36

Organism: scnpilot_dereplicated_Nitrobacter_2

near complete RP 42 / 55 MC: 1 BSCG 42 / 51 MC: 2 ASCG 11 / 38
Location: 40639..40887

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=3 Tax=Nitrobacter RepID=HFQ_NITHX similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 82.0
  • Bit_score: 170
  • Evalue 5.90e-40
hfq; RNA-binding protein Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 82.0
  • Bit_score: 170
  • Evalue 1.90e-40
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 82.0
  • Bit_score: 170
  • Evalue 8.30e-40

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Taxonomy

Nitrobacter sp. Nb-311A → Nitrobacter → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 249
ATGGCGATAGACCGCGCACAAAACCTTCAGGACACCTTCCTCAACCACGTTCGAAAGACCAAGACGCCCTTGACCATCTTTCTGGTGAACGGAGTCAAGCTGCAGGGAATTGTCACCTGGTTCGACAATTTCTGCCTGTTGCTCAGGCGGGACGGTCATTCGCAGCTTGTTTACAAACACGCAATTTCGACCATCATGCCGGGCGCTCCGATCCAGTTATTCGAAGGCGGCGAGGACGCTCCGCTTTGA
PROTEIN sequence
Length: 83
MAIDRAQNLQDTFLNHVRKTKTPLTIFLVNGVKLQGIVTWFDNFCLLLRRDGHSQLVYKHAISTIMPGAPIQLFEGGEDAPL*