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SCNpilot_cont_300_bf_scaffold_2140_curated_10

Organism: scnpilot_dereplicated_Nitrobacter_2

near complete RP 42 / 55 MC: 1 BSCG 42 / 51 MC: 2 ASCG 11 / 38
Location: comp(8707..8877)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UHQ0_METS4 similarity UNIREF
DB: UNIREF100
  • Identity: 98.2
  • Coverage: 56.0
  • Bit_score: 111
  • Evalue 2.20e-22
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 98.2
  • Coverage: 56.0
  • Bit_score: 111
  • Evalue 7.00e-23
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.2
  • Coverage: 56.0
  • Bit_score: 111
  • Evalue 3.10e-22

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Taxonomy

Parvibaculum lavamentivorans → Parvibaculum → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 171
GTGCTGCGCATGCGCTTCGGCATCGGCATGAACACCGACCACACGCTGGAGGAAGTCGGCCAGCAGTTCTCGGTGACGCGCGAACGCATCCGCCAGATCGAGGCCAAGGCGCTGCGCAAGCTGAAGCATCCGTCGCGCAGCCGTAAACTGCGTTCGTTCCTCGACAACTAG
PROTEIN sequence
Length: 57
VLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN*