ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1340_curated_44

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(40040..40633)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.8
  • Coverage: 198.0
  • Bit_score: 335
  • Evalue 6.00e-89
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] similarity KEGG
DB: KEGG
  • Identity: 87.2
  • Coverage: 179.0
  • Bit_score: 326
  • Evalue 6.30e-87
2''-5'' RNA ligase n=1 Tax=Rhizobium sp. CF122 RepID=J2RLW5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 82.1
  • Coverage: 196.0
  • Bit_score: 334
  • Evalue 7.30e-89

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Neorhizobium galegae → Neorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 594
ATGCCGAGACTGTTTACCGCCCTCGAAATTCCCCGCAGCGTGGCATTGAGCCTTTCCCTGTTGCGCGGCGGCCTGCCCGGAGCCCGCTGGATCGACGTCGAGAACTATCACATCACCCTGCGCTTCATCGGCGATGTTGACGGGCGCACGGCCGACGAGATCGTCGACCGGCTCGACCGCATCGACCGCCCGGAATTCCAGCTTTCGATGACCGGCATCGGCTCGTTCGGCGGCAAGAAGCCGCATTCGGTCTGGGCCGGCGTGACGCCGGCGCCGGAGATGTTCGCACTGCAGGCGGAAATCGAGCGGCTGTGCCAGCGTCTCGGCCTGCCGCCGGATCCGCGCAAATTCACCCCGCATGTCACGCTTGCGCGCCTGAAAGGCGCCCGCGTCGACGATGTCGTGCATTACCTTTCCGGCCGCGGCAATTTCCAGACCGCCCCCTTCACCGTCCCCCGTTTCGTGCTCCTGTCGTCGCGCGATTCGGTCGGCGGCGGCCACTACCTGACGGAAGAGATTTTCCCGCTGCGCGAGGAAATCAACAGCCGCTCCCGCGAATGGGCCGGCGCCGTCCCGGAAAAGAGCCTCTTGTAG
PROTEIN sequence
Length: 198
MPRLFTALEIPRSVALSLSLLRGGLPGARWIDVENYHITLRFIGDVDGRTADEIVDRLDRIDRPEFQLSMTGIGSFGGKKPHSVWAGVTPAPEMFALQAEIERLCQRLGLPPDPRKFTPHVTLARLKGARVDDVVHYLSGRGNFQTAPFTVPRFVLLSSRDSVGGGHYLTEEIFPLREEINSRSREWAGAVPEKSLL*