ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1531_curated_20

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 21371..22225

Top 3 Functional Annotations

Value Algorithm Source
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.9
  • Coverage: 285.0
  • Bit_score: 428
  • Evalue 7.50e-117
Shikimate dehydrogenase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LFH6_RHITR similarity UNIREF
DB: UNIREF100
  • Identity: 71.9
  • Coverage: 285.0
  • Bit_score: 428
  • Evalue 5.40e-117
aroE; shikimate 5-dehydrogenase similarity KEGG
DB: KEGG
  • Identity: 71.9
  • Coverage: 285.0
  • Bit_score: 428
  • Evalue 1.70e-117

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium tropici → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 855
ATGGTTGATTCACGTGAAACAAGACGCGCCTTCGTCTGCGGCCATCCGATCAGGCATTCACGCTCGCCGCTGATACACGGCCATTGGCTGGAGCAGTTCGGCATCGCGGGGCGCTATACGGCCGAGGATGTCGCACCGGAAAACTTTGCCGGCTTCATCGAAGGCCTGCGCTCCGGCGAAGCCGGCTTCGTCGGCGGCAATGTCACCATTCCGCACAAGGAAGCCGCCTGCCGATTGGTGGATACGCCGGATGAACTGGCGAAGGAACTCGGCGCCGCCAACACGCTCTGGGTCGAGGACGGCAAGGTGCGGGCGACCAATACCGATGGCTACGGTTTCACCGCCAATCTCGATGCCTGCCATCCCGGCTGGGACAAGGGCTTGCGTGCGGTGATCTTTGGGGCAGGTGGTGCTGCGCGCGCCATCGTCCAGGCAGTGCGCGATCGTGGTTTTTCGGAAGTGCATATCGTCAACCGCACCGTCGCGCGGGCGCAGGAACTGGCGGACCGGTTCGGCCCGAAAATTTTCGCGCATCCGCAAGGCGCGCTCGGCGAGGTGATGCGCGGCGCCGATCTCTTCGTCAACACCACCTCGGTTGGCATGGATGGCGAGAATGCCATCGACCTCGATTTTGCGCCGCTGGTATCCGGTGCGGTCGTCACCGATATCGTCTATGTGCCGTTGATGACGCCGATGCTGATCAAGGCGCAGGCGCAAGGCTTTGCGATTGTCGATGGGCTCGGTATGTTGCTGCATCAGGCGGTGCCCGGTTTTGAAAAATGGTTTGGCCGGCGGCCGGCCGTCGATGAGGCGCTACGGGCATTGATCGTCGCCGATATGGAGCGCCATGCATGA
PROTEIN sequence
Length: 285
MVDSRETRRAFVCGHPIRHSRSPLIHGHWLEQFGIAGRYTAEDVAPENFAGFIEGLRSGEAGFVGGNVTIPHKEAACRLVDTPDELAKELGAANTLWVEDGKVRATNTDGYGFTANLDACHPGWDKGLRAVIFGAGGAARAIVQAVRDRGFSEVHIVNRTVARAQELADRFGPKIFAHPQGALGEVMRGADLFVNTTSVGMDGENAIDLDFAPLVSGAVVTDIVYVPLMTPMLIKAQAQGFAIVDGLGMLLHQAVPGFEKWFGRRPAVDEALRALIVADMERHA*