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SCNpilot_expt_1000_bf_scaffold_1333_curated_5

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(3641..4300)

Top 3 Functional Annotations

Value Algorithm Source
Polar amino acid ABC transporter inner membrane subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM12_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 92.2
  • Coverage: 219.0
  • Bit_score: 407
  • Evalue 9.90e-111
Polar amino acid ABC transporter inner membrane subunit {ECO:0000313|EMBL:EYR77407.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.2
  • Coverage: 219.0
  • Bit_score: 407
  • Evalue 1.40e-110
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 71.2
  • Coverage: 219.0
  • Bit_score: 321
  • Evalue 1.70e-85

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 660
ATGCAGGGTCTCGATTTCAGCATCGTCCCGGAATATTGGCCGCTGATCGGCAAGGGCCTGTGGTGGACCGTCGTCATCTCGGCCACCTCGGCCGTGCTCAGCGTCGTCGCCGGCATCGGTTTTGCTCTGCTGGTGCTCTATGCCCCGCCGGTGCTGCGCTATCCGGTTCGTGCCTTCATGTGGCTGTTCATGGGCACGCCTCTGCTTCTGCAACTCTTCCTCATCTATTTCGGCCTCGTGCAGGTCGGCATCGACATCCCCGCGCTCTGGTCGGGGATCATCGGCCTCAGCCTGCATTTCGCCGTCTACAATGCCGACATTTTTCGCGCCGGCATCGCCTCCCTGGACAAGGGGCAGACGGAAGCGGCGCGCTCGCTCGGCTTCGGGGCCTGGCGAACGCGGGTCTACATCCTCGTGCCGCAGGCGCTGCGCAATACGGTGCCGGCCATCGGCAACATGATGATCGCGCTGTTGAAGGAATCCTCGATCGTCTCGATGATCGGCATTGCCGAACTGGTGCATAGCGCCCAGCTCGTCATCAGCGAGACCTACCGGCCCTTCGAATTCTACCTGACGGCGGCCGCCCTGTATTACGTTCTCAATCTCGTCCTCGAAGCGATCCTCAGGGGGATCGAACGGAAAGTGGAGCTTTCGCGATGA
PROTEIN sequence
Length: 220
MQGLDFSIVPEYWPLIGKGLWWTVVISATSAVLSVVAGIGFALLVLYAPPVLRYPVRAFMWLFMGTPLLLQLFLIYFGLVQVGIDIPALWSGIIGLSLHFAVYNADIFRAGIASLDKGQTEAARSLGFGAWRTRVYILVPQALRNTVPAIGNMMIALLKESSIVSMIGIAELVHSAQLVISETYRPFEFYLTAAALYYVLNLVLEAILRGIERKVELSR*