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SCNpilot_expt_1000_bf_scaffold_2126_curated_23

Organism: scnpilot_dereplicated_Rhizobiales_11

partial RP 41 / 55 MC: 1 BSCG 39 / 51 MC: 1 ASCG 8 / 38
Location: comp(23026..23274)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWE4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 93.9
  • Coverage: 82.0
  • Bit_score: 154
  • Evalue 5.70e-35
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.9
  • Coverage: 82.0
  • Bit_score: 154
  • Evalue 8.00e-35
RNA chaperone Hfq similarity KEGG
DB: KEGG
  • Identity: 93.6
  • Coverage: 78.0
  • Bit_score: 146
  • Evalue 2.90e-33

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Taxonomy

Mesorhizobium alhagi → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 249
ATGGCGGAACGTACGCAAAATCTTCAGGACCTGTTCCTCAACTCCGTTCGCAAGAGCAAGATCCCTCTCACCACCTCCCTCATCAACGGCGTCAAGCTGACCGGCGTGGTCACCTCGTTCGACAATTTCTGCGTGCTGCTGCGGCGCGACGGGCATTCCCAGCTCGTCTACAAGCACGCGATCTCGACCATCATGCCGAGCCAGCCTGTGCAGATGTTCGATGGCGAGGAAAACGGCCGGGACGCCTGA
PROTEIN sequence
Length: 83
MAERTQNLQDLFLNSVRKSKIPLTTSLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHAISTIMPSQPVQMFDGEENGRDA*