ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1623_curated_28

Organism: scnpilot_dereplicated_Rhizobiales_11

partial RP 41 / 55 MC: 1 BSCG 39 / 51 MC: 1 ASCG 8 / 38
Location: comp(23097..24029)

Top 3 Functional Annotations

Value Algorithm Source
Putative transcriptional regulatory protein, LysR family n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T4P9_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 52.0
  • Coverage: 302.0
  • Bit_score: 314
  • Evalue 9.50e-83
Nodulation protein NfeD {ECO:0000313|EMBL:KGM47165.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S11g.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.3
  • Coverage: 307.0
  • Bit_score: 338
  • Evalue 8.60e-90
putative transcriptional regulatory protein, LysR family similarity KEGG
DB: KEGG
  • Identity: 52.3
  • Coverage: 302.0
  • Bit_score: 312
  • Evalue 1.10e-82

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pseudooceanicola atlanticus → Pseudooceanicola → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 933
ATGCGCTTCAAGAAGCTCGACCTGAACCTGCTGGTGGCGCTGGACCACCTGCTCAACCTCCAGTCCATCAGCCGCGCGGCCGAGCAGATGAACATGAGCCAGTCGGCCATGTCCAACGCGCTGACGCGGCTGCGGGCCTATTTCGACGATCCGCTGCTGGTGCAGGTCGGGCGGCGCATGGAGCTGACGCCGCGCGCGCAGGCCATGCAGCACTCGATCCGCGACATCCTCGTGCGCGTCGAAGCGACGATCTCCAGCGACGTCGAGTTCGACCCGAGGAACTCTACGCGCGAATTCCGCATCCTGTTGTCCGACTATTCGATGACGGCCTTCATGCCGCGCGTGCTGGCGCTGGCCGCCCGCGAGGAGGCGCAGGTGCGCTTCAACCTGCTGCCGCAGACGGAGATTCCGTATCTGACCATCGAGCGCGGCGACGCCGACCTGCTGATCGCGCCCGGCATGTTCATCTCGAAGGAGCATCCGAGCGAGCTGGTCTACGAGGACGACTTCGTCTGCGTCGCCTGGTCGGAGGGCCGCTACGGAAGCGCGCCGCTGACGGAGGCCGACTATCGCAGGGCGCGGCATGTGCGCATGTACCCGCCGACGGTGCCGACCAGCTTCGAGAACGGCTTCCTCGCCGAGCACGGCATCGAGCGCGACATCGACGTCTATTGCTACTCCTTCGCCGTGCTGCCGCACCTCGTCGTCGGCTCGGACCGGCTGGCGACGGTGCACGGGCTGATCGGGCGGGCGGCCATCCACGGCCTGCCGGTCACGGTGCATCCGCTGCCGTTCTCCGCGCCGCTGCTCGACCAGCACGTGCAGTGGCACGAGCACAAGAAGCAGGACCCCGGAATCAAGTGGCTGAGGGGGCTGATGCGCCGCGCTGCGGCCGACCTGCCGGTGCCGCGGTCCAATCGAGCGGGTCAATAG
PROTEIN sequence
Length: 311
MRFKKLDLNLLVALDHLLNLQSISRAAEQMNMSQSAMSNALTRLRAYFDDPLLVQVGRRMELTPRAQAMQHSIRDILVRVEATISSDVEFDPRNSTREFRILLSDYSMTAFMPRVLALAAREEAQVRFNLLPQTEIPYLTIERGDADLLIAPGMFISKEHPSELVYEDDFVCVAWSEGRYGSAPLTEADYRRARHVRMYPPTVPTSFENGFLAEHGIERDIDVYCYSFAVLPHLVVGSDRLATVHGLIGRAAIHGLPVTVHPLPFSAPLLDQHVQWHEHKKQDPGIKWLRGLMRRAAADLPVPRSNRAGQ*