ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3495_curated_21

Organism: scnpilot_dereplicated_Rhizobiales_11

partial RP 41 / 55 MC: 1 BSCG 39 / 51 MC: 1 ASCG 8 / 38
Location: comp(18727..18936)

Top 3 Functional Annotations

Value Algorithm Source
cold-shock protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000380A540 similarity UNIREF
DB: UNIREF100
  • Identity: 79.7
  • Coverage: 69.0
  • Bit_score: 116
  • Evalue 1.50e-23
Cold shock protein Qin prophage {ECO:0000313|EMBL:CDX36689.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.4
  • Coverage: 69.0
  • Bit_score: 127
  • Evalue 6.80e-27
cold-shock DNA-binding protein family protein; K03704 cold shock protein (beta-ribbon, CspA family) similarity KEGG
DB: KEGG
  • Identity: 78.3
  • Coverage: 69.0
  • Bit_score: 111
  • Evalue 8.60e-23

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Mesorhizobium sp. SOD10 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 210
ATGAGCACCGGAACCGTAAAGTTTTTCAACGCCACCAAGGGCTTCGGCTTCATCGAGCAGGGCGGCGGACAGCCGGACGTGTTCGTTCACATCTCCGCCGTCGAGCGCGCCGGCATGCGCACCCTCGTCGAGGGCCAGAAGGTCAACTTCGACTTGGTGCAGGACCGCCGCAGCGGCAAGAACGCGGCCGAGAATCTTCAGGCCGCATAA
PROTEIN sequence
Length: 70
MSTGTVKFFNATKGFGFIEQGGGQPDVFVHISAVERAGMRTLVEGQKVNFDLVQDRRSGKNAAENLQAA*