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SCNpilot_expt_1000_bf_scaffold_1223_curated_14

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: 16965..18359

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HGD9_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 89.1
  • Coverage: 467.0
  • Bit_score: 797
  • Evalue 5.50e-228
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.7
  • Coverage: 466.0
  • Bit_score: 802
  • Evalue 4.10e-229
RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 88.2
  • Coverage: 468.0
  • Bit_score: 796
  • Evalue 3.90e-228

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Taxonomy

Agrobacterium rubi → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1395
ATGGCAACCAAGGTCAAAGAAAACGAAGAGGCTGAAGTCGAACGCGACGGTGCTCCGGACGGCCCCCTTCTGGATCTTTCCGACGATGCGGTCAAGAAAATGATCAAGGCCGCCAAGAAGCGCGGCTACGTGACGACGGATGAGTTGAACGAAGTGCTGCCTTCCGATCAGGTCGACCCCGACCGGATCGAGGACATCATGGCGATGCTCAACGAAATGGGCATCAACGTCGTCGAGGACGAAGAGGTCGAGGACGCCAATTCCGAAGAGGAAGAGGGCGATACCGATACCGAGAGCGAAGGCGGCGAACTGGCGCCGACGTCCGGCACGGCGCTGGCCGCCAGCAAGAAGAAAGAGCCGACCGACCGTACCGACGACCCGGTGCGCATGTATCTGCGCGAAATGGGGTCCGTCGAGCTTTTGTCGCGCGAAGGCGAAATCGCCATCGCCAAGCGTATCGAGGCCGGCCGCGAAACCATGATCGCCGGTCTCTGCGAGAGCCCGTTGACGTTCCAGGCGCTGATCATCTGGCGCGACGAACTCAACGAAGGCACGACGCTGCTGCGCGAGATCATCGACCTCGAAACGACCTATTCCGGCCCGGAAGCCAAGGCTGCGCCGCAGTTCCAGAGCCCGGAAAAGATCGAAGCCGACCGCAAGGCGGCCGAGGAGAAGGAACGCACCCGCAGACCGCGTGGGGCCAGCGGTGAAGACGATATCACCAATGTCGGCGGCGAAGGCCTGCCCATCGAGGAAGAAGAGGAGGACGAGGACGAATCCTCGCTCTCGCTCGCCGCGATGGAAGCCGAACTGCGCCCGCAGGTGATGGAGACGCTCGATGTCATCGCCGACACCTACAAGAAGCTGCGCAAGCTGCAGGACCAGCAGGTGGAAGCCCGCCTGGCTGCCGTCGGCACGCTGTCTTCCGGCCAGGAGCGCCGCTACAAGGAGCTCAAGGACCAGCTGATCACCGCCGTCAAGTCGCTGTCGCTAAACCAGAACCGCATCGACAGCCTCGTCGAGCAGCTCTACGACATCAACAAGCGTCTCGTGCAGAACGAAGGCCGGCTGCTGCGCCTTGCCGAATCCTACGGCGTCAAGCGTGACAGCTTCCTCGAGCAGTACAGCGGTGCGGAACTCGATCCGAACTGGATGAAGTCGATCGCCAACCTGGCCGCCCGCGGCTGGAAGGAATTCGCCAAGTCGGAAAACACCACGATCCGCGACATCCGCCAGGAGATCCAGAATCTCGCGACGGAAACCGGCATCTCGATCTCGGAATTCCGCCGCATCGTGCACATGGTGCAGAAGGGTGAGCGCGAAGCGCGCATCGCCAAGAAAGAAATGGTCGAAGCCAACCTGCGCCTCGTCATTTCCATCGCCAAGAAGTACACG
PROTEIN sequence
Length: 465
MATKVKENEEAEVERDGAPDGPLLDLSDDAVKKMIKAAKKRGYVTTDELNEVLPSDQVDPDRIEDIMAMLNEMGINVVEDEEVEDANSEEEEGDTDTESEGGELAPTSGTALAASKKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKERTRRPRGASGEDDITNVGGEGLPIEEEEEDEDESSLSLAAMEAELRPQVMETLDVIADTYKKLRKLQDQQVEARLAAVGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDINKRLVQNEGRLLRLAESYGVKRDSFLEQYSGAELDPNWMKSIANLAARGWKEFAKSENTTIRDIRQEIQNLATETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYT