ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

SCNpilot_expt_1000_bf_scaffold_1736_curated_17

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: comp(13405..14454)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, LacI family n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z7G2_9RHOB similarity UNIREF
DB: UNIREF100
  • Identity: 64.1
  • Coverage: 340.0
  • Bit_score: 419
  • Evalue 3.10e-114
LacI family transcriptional regulator {ECO:0000313|EMBL:CDX14969.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.4
  • Coverage: 344.0
  • Bit_score: 458
  • Evalue 6.40e-126
LacI family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 39.5
  • Coverage: 334.0
  • Bit_score: 247
  • Evalue 8.60e-63

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Mesorhizobium plurifarium → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1050
ATGAAGGCCAAGACCCTGAATCGTCAAAGTAAGCCGCGCGTGACCGTCAAGGATCTGGCGCGGGATCTCGGGATGTCGGTTTCCACCGTCTCCCGGGCCTTCTATGCCGATGCCGTCATCGCTCCCACCACCCGCGAGGCCGTGCTCGCCCGCGCCCAGGAGATCGGCTACAAGCCGAACCCCTTCGCGCAGAGCCTGATCACCAAGAAGACGCAGATCGTCGGCATGGTGGTTTCCGACATCAACAACCCCTTCTATCCGGAGGTGATGACACGGCTGACGGAGGACCTGCAGGCGATCGGCATGAATGTCATGCTGGTGGCCGCAAGCGATTCCGCCAAGGTCGACGATGCCGTTCGGCTGCTCCTGTCCTACCAGCCGGACCTGGTGATCATCCTGGCAGCCTCGCTGTCGTCGGAAGCGATGCGGGAGTGTCGGGTGGCGGGCAGCCCCTGCATCTTCTTCAACCGCCTGTCGCTCGATCCGGAATGTTTCGGCGTCAGCTGCGACAACCGCGAAGGCGGGCGTCGCGCCGCCGATTTTCTCATCGACCGCAACCACCGCGCGCTCGCTTATGTCTCGGCCTTTCCCGACGCCTCGACCAATGTCGAGCGCAAGGAAGGTTTTGTCGACCGGGCGAAGGAGCGGGGCGTGGCGGAACCGGTGGTCATCGAGGCCGGCCGCTTCAGCTACGACGCCGGTTATGCCGCAGCCGACGCCTTCGCCGCGCTGCCGTTCCGCCCGGACGGCGTGTTCTGCGCCAACGACATCCTGGCGATCGGCTTCATCGAAGGCGTACGAGAGAAGCTGGGGCTGGATGTGCCTAAACATCTTTCGGTGATCGGCTTCGACGATATTTCCATGGCCCACTGGCCGTCGCACAGCCTGACCACCATCCGCCAGCCGGTGGACGAGATGCTGGCGACAACGGTGGAATTCGCCCGGGCGCTGGCCGCCAATCCGGAGGAAAAGCCGGTGGTGCGCCGCATCGTTCCAAGCGCCGTCATCGAACGCAACACGACACGCTGGCGTATGGAGGAGACGGAATGA
PROTEIN sequence
Length: 350
MKAKTLNRQSKPRVTVKDLARDLGMSVSTVSRAFYADAVIAPTTREAVLARAQEIGYKPNPFAQSLITKKTQIVGMVVSDINNPFYPEVMTRLTEDLQAIGMNVMLVAASDSAKVDDAVRLLLSYQPDLVIILAASLSSEAMRECRVAGSPCIFFNRLSLDPECFGVSCDNREGGRRAADFLIDRNHRALAYVSAFPDASTNVERKEGFVDRAKERGVAEPVVIEAGRFSYDAGYAAADAFAALPFRPDGVFCANDILAIGFIEGVREKLGLDVPKHLSVIGFDDISMAHWPSHSLTTIRQPVDEMLATTVEFARALAANPEEKPVVRRIVPSAVIERNTTRWRMEETE*