ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1415_curated_12

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: 12959..15265

Top 3 Functional Annotations

Value Algorithm Source
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VLR9_RHILT similarity UNIREF
DB: UNIREF100
  • Identity: 59.3
  • Coverage: 751.0
  • Bit_score: 852
  • Evalue 2.40e-244
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJC73763.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.3
  • Coverage: 751.0
  • Bit_score: 852
  • Evalue 3.30e-244
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase similarity KEGG
DB: KEGG
  • Identity: 58.5
  • Coverage: 751.0
  • Bit_score: 841
  • Evalue 2.30e-241

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium leguminosarum → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2307
ATGGGCGAGACCGGAATGCGGCGTACTTGTCTGCCGGATGGTGACGAAGAAACCTTTCAAGCACAGACCAGACGACTTGTGGCGGCAACCGAGGCGCTCCTCGACAACAACGAGGCTTTCGGCGACGGTCTGTCATGGCCTGTCCTCGCCGCCGCCCTCGACCAGGTTTCCGACCAGATCTATGTGAAGGACCTCGACAGCCGCTTCCTGTTCGCCAACTTGGCGACGGTGCGCACCAACCGCCTGGAATCGGCAGGCCAGCTCATCGGCAAAACCGATTTCGACCTGTTCCCGACCGATATCGCCGGAGGGTTCTACGAGAGCGAGCAGGCATTGCTGGCGCGCGGTATCCCCGAACTGGACATCGAGGAAACGCTGATCGCGCCGGACGGCCGCCAGTTCTGGTGGCTGACCTCGAAGACGCCGCTGCGCGACCGCGACGGCCGTGTTGTCGGGTTGATCGGCATTGCCCGTGACATCACCACCCGCAAGCGCGAGGAAGCGCTGCGCAGCGGCCAGGCGAACCTCCTGGAAATGATCGCCCGCAGCGAGCCGCTGCCCGCCATCCTGGAAGCGCTCGTGCGGCTGGTCGAAGAGCAGCTGGACAACATCCAGGCCTCCGTGCTGCTGCTCGATCCGGAAGGCAAGACATTGCACCAGGGGGCGGCGCCGAGCCTGCCAGCCGGCTACAACAAGCTGATCGACGGCGTTGCCATCGGGCCGAACATCGGTTCCTGCGGCACGGCCGCTTGGCTGGGAAAACCGGTCATCGTCAGCGACGTGCAGACCGACTACCGCTGGGCCAACTTCCGCGATCTCGCAGCCCAGTACGGCCTGTACTCCTGCTGGTCGACACCGATCCTGACGCACCAGGGCAATGTGCTTGGAACGCTTGCGCTGTATTCCGGCAGCGTGCGCCACCCGACCGAAAACGAGATGCAGCTGGTGGCGATGGCGACGCATATCGCCGGCATCGCCATCGAGCGCCAGCGCGCCGAGGACCGCATCCACTTCATGGCGCATCACGACGCGCTGACGGGGCTGCCCAACCGCACCTACTTCAAGGACAAGATCGCCGACGTGCTGCACCAGGCCAAGATCAGCGGCCAGCGGGTCATCGTCGCTTATGTCGATCTCGATAATTTCAAGCAGATCAACGATAATTACGGCCACAATGCCGGCGACGAGCTGCTGCGCCACGTGGCGGCGCGCATGCTGGAATTCACCCGCGCCTCCGATCTCGTCGTGCGCCTCGGCGGCGACGAATTCGTTCTCGTCTTCGCCAACCAGTCGCGTGGCGAGGGCGATATCCTGCCGCGGCTCGCCGAGCTGCGCCGCTCGATCTCGCGGCCGATCGCCGTCGACGGCGTCACCATCGCCACCACCTGCAGCATGGGCGTCGCCAGCTTTCCCGAAGACGGCGAAACGGCCGAGGAGTTGATCGCCAGCGCCGATGCGGCGATGTACCGGGCCAAGGAGCTGGGCCGGGATTCGCTGCAGGTGCACCGCAACGACGGCGGAAACCGGGTGGCCGAGCGCTTCAACCTGCAGGAGGAACTGCGCACCGCCATCGCCGGCGGCCAGCTGTTCCTCGATTACCAACCGCAGATCGATGTCGCCTCCGGCCATGTGCGCGGCGTCGAGGCACTGGTGCGCTGGAACCATCCCCGCCTCGGCGTCCTGGCGCCGGGAAGCTTCATCGCGCTCGCGGAAGAATGCGGCCTGATCCTGCCGCTCGGCCTGTGGGTGCTCAAGACCGCCTGCCGGCAGAACAAGCGCTGGCGCGATCTCGGCCTGCCGCCGGTCGTCATGGCCGTCAACGTCTCCCCCCGGCAGTTCTGCGACCCGATGCTGATCGGCCAGGTCAGCCTGGCGCTGAAGGAAAGCGGGCTGGAGCCGCAATTCCTCGAACTGGAACTGACGGAGAATGCCATCAGCCAGGATGTGCCGCGGGCGCTCGCCACCATGGCCGAGCTCGAAAAGCTCGGCATACGCCTGTCGATCGACGATTTCGGCACCGGATATGCCAACCTGGCGGCACTGAAGACGTTTCCCGTGCGGCGGCTGAAGATGGACCGTTCCTTCGTGGAAGCCCTGCCGCACGACCCGACCATGGCCGCCATCGCCTCCGCCGTCATCAGCCTCGCCCGCGGGCTCAACCTCAGCGTCGTGGCCGAAGGCGTCGAGAATGCCGAACAGATGGCCTATCTGCGCCACAACGGCTGCGACGAGGTGCAGGGTTTCCATTTCTCGCGGCCGGTGGCGCCCGAAGGCATCGAACGGCTGCTGGCCGCGCCTCCGGCATAA
PROTEIN sequence
Length: 769
MGETGMRRTCLPDGDEETFQAQTRRLVAATEALLDNNEAFGDGLSWPVLAAALDQVSDQIYVKDLDSRFLFANLATVRTNRLESAGQLIGKTDFDLFPTDIAGGFYESEQALLARGIPELDIEETLIAPDGRQFWWLTSKTPLRDRDGRVVGLIGIARDITTRKREEALRSGQANLLEMIARSEPLPAILEALVRLVEEQLDNIQASVLLLDPEGKTLHQGAAPSLPAGYNKLIDGVAIGPNIGSCGTAAWLGKPVIVSDVQTDYRWANFRDLAAQYGLYSCWSTPILTHQGNVLGTLALYSGSVRHPTENEMQLVAMATHIAGIAIERQRAEDRIHFMAHHDALTGLPNRTYFKDKIADVLHQAKISGQRVIVAYVDLDNFKQINDNYGHNAGDELLRHVAARMLEFTRASDLVVRLGGDEFVLVFANQSRGEGDILPRLAELRRSISRPIAVDGVTIATTCSMGVASFPEDGETAEELIASADAAMYRAKELGRDSLQVHRNDGGNRVAERFNLQEELRTAIAGGQLFLDYQPQIDVASGHVRGVEALVRWNHPRLGVLAPGSFIALAEECGLILPLGLWVLKTACRQNKRWRDLGLPPVVMAVNVSPRQFCDPMLIGQVSLALKESGLEPQFLELELTENAISQDVPRALATMAELEKLGIRLSIDDFGTGYANLAALKTFPVRRLKMDRSFVEALPHDPTMAAIASAVISLARGLNLSVVAEGVENAEQMAYLRHNGCDEVQGFHFSRPVAPEGIERLLAAPPA*