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SCNpilot_expt_1000_bf_scaffold_3652_curated_16

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: comp(19225..19797)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWB3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 64.2
  • Coverage: 165.0
  • Bit_score: 220
  • Evalue 1.90e-54
RNA polymerase sigma factor {ECO:0000313|EMBL:EYR78140.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.2
  • Coverage: 165.0
  • Bit_score: 220
  • Evalue 2.70e-54
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 57.7
  • Coverage: 168.0
  • Bit_score: 204
  • Evalue 3.50e-50

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 573
ATGTCAGGGAAACGGGGATGGGCGTGCCTGACGCGCATCCCGGAACGGCAGTCGGGAATGACCACGGACGGGGATATCCGGCATGGACTCTATATCGCGCATCGCTCGGCGCTGATCGATTATGCCGCGCGCATTCTCGGTTCGCGCGAGGCGGCGGAAGATATCGTGCAGGATGCCTATCTGCGTTTTGCGCCGGGACGGGCGGGCGGCGATCCGGCGCGCCAGGCGCTGGCCTACCTCTATCGCATCGTTCGCAATCTCGCCTTCGACGTTCTCAAGCGCCGCAAGATCGAGGTCCGGGAACAGGCCGGCGATCCGCCTTTCTGGACGGTGCCGCAAACGGTCGAGACGCCGGAGCAGGCCCTGATCCTCAACGACGAGGTTCGCATTGCCGCGGATGTGCTGGCTTCCCTGCCGCGAGACGTGCAGATCGCCGTGGAGATGCATCGTTTCGGCGGACGGACGCTGGACGAGGTCGCGGCGCATCTCGGGATTTCCGTCGCCACCGCCCATCGCCATGTCCGCTCGGCCATGGTCAAGATCGCCATGGCCATCGGCACGGCCGGTTCCTGA
PROTEIN sequence
Length: 191
MSGKRGWACLTRIPERQSGMTTDGDIRHGLYIAHRSALIDYAARILGSREAAEDIVQDAYLRFAPGRAGGDPARQALAYLYRIVRNLAFDVLKRRKIEVREQAGDPPFWTVPQTVETPEQALILNDEVRIAADVLASLPRDVQIAVEMHRFGGRTLDEVAAHLGISVATAHRHVRSAMVKIAMAIGTAGS*