ggKbase home page

SCNpilot_expt_1000_bf_scaffold_12848_curated_5

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: comp(3501..5147)

Top 3 Functional Annotations

Value Algorithm Source
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F571_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 57.9
  • Coverage: 451.0
  • Bit_score: 491
  • Evalue 1.30e-135
Uncharacterized protein {ECO:0000313|EMBL:KKN63456.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.7
  • Coverage: 454.0
  • Bit_score: 512
  • Evalue 1.00e-141
mcpA; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein similarity KEGG
DB: KEGG
  • Identity: 56.4
  • Coverage: 447.0
  • Bit_score: 480
  • Evalue 9.40e-133

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

marine sediment metagenome

Sequences

DNA sequence
Length: 1647
TCATCCCTGGCTCCCTGGCAAACCGATATTCACATGGCATTCTTTGCAGCACTGGCGATCAGCGCGCTGATGTACGACACCCGCGTTGTTCTTGTCGGCGCTGCACTGGTTGCCGTTCACCATCTCGGCATGGGCATAAGCCTCGACGCACTGGTCTTCTACGGCGGCGGAAGCCTTGGCCGTATTGCCCTGCACGCGATCATCCTGGTGCTCGAAACGGTGGCGCTCTGCTGGATGATCAGACAAACGCAAAGGCTTCTTTTCATTGCGGCGGACGGTGAACAACAGGCGCGTGCCGAAGCTGACCGCACCGCTCGACTGCTCGCAACCGCGCTGGATGCGCAGGGGCAACTTGCCGCCGTTTCCAGAGCTCAAGCGATCATTCAATTTTCGCCCGAAGGCGAAATTCTCTCGGCCAATGAGAATTTCCTTTCGACGCTTGGTTATGAACTTGCCGAGATCGTCGGCCGCCATCATCGCATGTTCGTGGATGCAGCCTATGGCAGCAGTCCCGAATATGTCGAGTTCTGGCGCCGGCTGCGCGGTGGTGAGTTCGCAGCCGAAGAATTCAAGCGTATCGGCAAGGATGGGCGAGAAGTCTGGATCCAGGCGTCCTACAATCCGATCTTCGACGAAAACGGGAACGTCGTAACCGTGGTGAAGTTCGCCACCGACATTACCGGGCGGGTCCATGCTGTGAACCAGATCGGGTCGGGCCTTGGCAAGATTGCGGCTGGCGACCTGACATGTGTGATCACCCAGCCCTTTATTCCGGCTCTGGATCGGTTGAGGGTCGATTTCAACAGGTCGGCCGAGGTCCTGCGCAGCGCCCTGCGAACGGTGGAGCAAAATGCTTCATCCATCGATGATGCTGCCGGCGATGTGAGCTCGGCCGCCGACGAGTTGGCGAAACGCACCGAGCATCATGCCACTTCGGTAGAGGAGGCCGCTACGGCCCTTGATCAGGTCACGGCCACCGTCCGGAATTCCGCCAAGCGTGCCGAAGAGGTGGGCAGCATTGTCGCGCGCACCAAGGCCAGCGCCGAAACATCCGGGGAGGTCGTTCAGCAGGCGGTCGCGACAATGGGAGAAATCGAGCGATCGTCCCGCGAGATTTCAACCATTACTGACATGATGGATGAAATCGCCTTCCAGACAAATCTCCTGGCGCTTAACGCCGGGGTCGAAGCCGCTCGCGCCGGCGAGGCGGGCAAGGGATTTGCAGTTGTTGCTCAGGAAGTCCGTCAGCTTGCGCAACGCTCGGCCGAAGCCTCGCGCGAGATAAAAGCCCTTATCGTCAAATCCAGTGCCGAGGTTAAAGCGGGCGTATCTCTTGTGGGCGATACCGGTGCGGCGCTGAAGACCATCATCGACGATGTGCAGGAGATCAGCGGGCATGTGCTTGCCATTGCGGAGACCTCGCGTGAGCAGTCTGCGGCGCTTGGCGAAATCAACACGGCCGTAGGCACGATCGAGCAGGGCACGCAACAGAATACGGCAATGGTGGAGGAAACGTCAGCCGCCAGCGTGAACCTTGCGTCTCTGGCGGCACAGTTGAAAGAGCTTCTTGCTACTTTCCGTCTCGATGCCAGCGAGCGGCGCAATCCCGGACAACCGGAATGGGCTGTACCGGCGCGTGCTGCGTGA
PROTEIN sequence
Length: 549
SSLAPWQTDIHMAFFAALAISALMYDTRVVLVGAALVAVHHLGMGISLDALVFYGGGSLGRIALHAIILVLETVALCWMIRQTQRLLFIAADGEQQARAEADRTARLLATALDAQGQLAAVSRAQAIIQFSPEGEILSANENFLSTLGYELAEIVGRHHRMFVDAAYGSSPEYVEFWRRLRGGEFAAEEFKRIGKDGREVWIQASYNPIFDENGNVVTVVKFATDITGRVHAVNQIGSGLGKIAAGDLTCVITQPFIPALDRLRVDFNRSAEVLRSALRTVEQNASSIDDAAGDVSSAADELAKRTEHHATSVEEAATALDQVTATVRNSAKRAEEVGSIVARTKASAETSGEVVQQAVATMGEIERSSREISTITDMMDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRQLAQRSAEASREIKALIVKSSAEVKAGVSLVGDTGAALKTIIDDVQEISGHVLAIAETSREQSAALGEINTAVGTIEQGTQQNTAMVEETSAASVNLASLAAQLKELLATFRLDASERRNPGQPEWAVPARAA*