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SCNpilot_expt_1000_bf_scaffold_1263_curated_19

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: 20841..21518

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional repressor CsiR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWZ5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 70.6
  • Coverage: 218.0
  • Bit_score: 310
  • Evalue 1.30e-81
HTH-type transcriptional repressor CsiR {ECO:0000313|EMBL:EYR80854.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.6
  • Coverage: 218.0
  • Bit_score: 310
  • Evalue 1.80e-81
ygaE; GntR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 44.3
  • Coverage: 221.0
  • Bit_score: 170
  • Evalue 5.00e-40

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 678
ATGCCGGACGCGAAGAAAAAATCCTCGGGCACTTTGGCGGGCGACGCCTACACGCTCATTCACGAGGCGATCCGTGCCGGCCGTTTCCGGCCGGGGGACAGGCTGCGCTTTGCCGAGTTGCAGGCGCTTTGCGGCATGAGCGTCACCCCGGTGCGTGAGGCGCTGGCCCGGCTGACCGCTGAAGGGTTTACGACGCTCGACAACCACAAGGGCTACAGTGTCGCCAGCCTGTCGCTCGACGAGTTGCGCGACATTACGGCGATGCGGAAACTGTGCGAATCCGAAGCGTTGCGCCTGTCGATCCTGCATGGCGACGACGGCTGGGAAAGCCGGATCATCGCAGCACACCACCTGATGGCGCGGCTGCCGCGCCAGCGCGACGATATTCCTTCGGTGGTACGCGACGATTGGGACGAACGGCATGCCGCCTTCCACCAGGCATTGATTTCCGCCTGCCGCTCGCCGATCCTGCTGGAAATCTGCGAAAAGCTGTTCACGCGCGCCGACCGCTACCGCCGCGTGTCAATCAGCGTCGACCTTACGAGGGATGTGGCGGCCGAACACCGGACGATCATGGATAGGACGCTGGCACGCGACCCGGAGGGCGCCGTCGAGGCGCTCTGTCGCCATTACCAGGAAACCGCCAATTCGCTGGAGCAGGTGCTGCAGGCGATGTGA
PROTEIN sequence
Length: 226
MPDAKKKSSGTLAGDAYTLIHEAIRAGRFRPGDRLRFAELQALCGMSVTPVREALARLTAEGFTTLDNHKGYSVASLSLDELRDITAMRKLCESEALRLSILHGDDGWESRIIAAHHLMARLPRQRDDIPSVVRDDWDERHAAFHQALISACRSPILLEICEKLFTRADRYRRVSISVDLTRDVAAEHRTIMDRTLARDPEGAVEALCRHYQETANSLEQVLQAM*