ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2187_curated_18

Organism: scnpilot_dereplicated_Sphingobacteriales_5

near complete RP 46 / 55 MC: 2 BSCG 41 / 51 MC: 1 ASCG 9 / 38
Location: comp(11411..11995)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0NPZ5_ELIME similarity UNIREF
DB: UNIREF100
  • Identity: 55.4
  • Coverage: 186.0
  • Bit_score: 215
  • Evalue 6.40e-53
RNA polymerase, sigma-24 subunit, ecf subfamily protein {ECO:0000313|EMBL:ELR79862.1}; TaxID=1246994 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis R26.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.9
  • Coverage: 186.0
  • Bit_score: 215
  • Evalue 9.00e-53
RNA polymerase, sigma-24 subunit, ecf subfamily similarity KEGG
DB: KEGG
  • Identity: 52.6
  • Coverage: 190.0
  • Bit_score: 198
  • Evalue 1.90e-48

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Elizabethkingia anophelis → Elizabethkingia → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 585
ATGACCGCCGTCATCAATATTTCAGTGGAACAAAAAAGCAGGCAAAATATACTTTCACAGGCAGTTAAAAAATACGGGCAGCAACTGTTTGCGTTCGTACGAAAACGGGTGAACCGCCTTGAGGACGCTGAAGATGTAATGCAGGACGTTTGGTACCAGCTAAGTAATCTTTCTAACATTGAAGAAGTAGTGAATATAGATAGCTGGCTTTACAGGGTTTCGCAAAACAAAATTATTGACCTGTATCGAAAAAAGGGGTCGGCGCTATTTGAAGAAGTGGCATCAGAAGACCGGGACGGTGTGCAGTTTATTCGTGAGGTTTTGTTTACGAGCGCCTCAAACAATGCAGACCTTGAACTTTTAAAAAAGGAATTTTGGAAAGAGCTGCTTGCTTCGCTTGACGAGTTGCCCGAAAGCCAGCGCCTTGTTTTTGTTCAAAATGAGTTGGAAGATAAAACACTTCAGCAGATTGCTGATGAACAGGCAGAGAACCTAAAAACCATAATCAGCCGTAAAGGATATGCTGTAAAATATTTACGAAAAAAATTGTTGAATTTATATAATGATCTTTTATTAAACAGATAG
PROTEIN sequence
Length: 195
MTAVINISVEQKSRQNILSQAVKKYGQQLFAFVRKRVNRLEDAEDVMQDVWYQLSNLSNIEEVVNIDSWLYRVSQNKIIDLYRKKGSALFEEVASEDRDGVQFIREVLFTSASNNADLELLKKEFWKELLASLDELPESQRLVFVQNELEDKTLQQIADEQAENLKTIISRKGYAVKYLRKKLLNLYNDLLLNR*