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SCNpilot_expt_1000_bf_scaffold_439_curated_13

Organism: scnpilot_dereplicated_Sphingobium_2

near complete RP 52 / 55 BSCG 51 / 51 ASCG 12 / 38 MC: 1
Location: 12133..12846

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Methylocystis sp. (strain SC2) RepID=I4EB06_METSZ similarity UNIREF
DB: UNIREF100
  • Identity: 70.5
  • Coverage: 220.0
  • Bit_score: 308
  • Evalue 6.80e-81
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.5
  • Coverage: 220.0
  • Bit_score: 308
  • Evalue 9.50e-81
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 65.1
  • Coverage: 232.0
  • Bit_score: 292
  • Evalue 1.20e-76

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Taxonomy

Methylocystis sp. SC2 → Methylocystis → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 714
ATGCCGATCATGCGTGACAAGCCGGCGGGACGTTTGCCGGGGAGCCTGTCGGAGCCGGACCTGGTCGCGCGCGCGGCCGAGGGCGACGAGGCTGCGTTCGAGGTCATCATGCGGCGTCACAACCAGTTGCTGTTCCGTAGCGCGCGTAGCATCGTGCGCAGCGACACCGAGGCCGAGGATGTGGTGCAGGAAGCCTATCTGCGCGCGTGGCGGGCGCTTTCCGGCTATCGCGCGCAAAGCCGGCTGGCGACATGGCTGGTGCGCATCGCCGTCAACGAAGCTCTGGGCCGGCTGAGGCGCAAGAGCGCCGAGGTCATTCCTCTGGAGGCCGCGATGGCATCACCCGAACCCGAGATTCAGGCGGCGCTGACCGAGGCACCCGGCCGAAGCCCCGAGCAAGCGGCGGCGCGCGCGCAGATGCGGACGCTGATGGAAGCGCGCATCGACCTTCTTCCCGACGCGTTCCGCACGGTCTTCGTGCTGCGCGCGGTCGAGGAACTGAGCGTCGAGGATGTCGCGCAGGCGCTCGATATTCCCGAGGCGACGGTCCGGACCCGCTTCTTCCGCGCGCGGAGCCTGCTGCGGGAGAGCATCGCGCAGGCCATGGACGTCGCGCTCGACGAAGCTTTCGCGTTCGATGGCGAGCGCTGCGACCGGATCGTGGCCGGTGTCCTCGCGAGAGGCCGTATGGAAGGGCTGGCGGGCAAGGCGTAG
PROTEIN sequence
Length: 238
MPIMRDKPAGRLPGSLSEPDLVARAAEGDEAAFEVIMRRHNQLLFRSARSIVRSDTEAEDVVQEAYLRAWRALSGYRAQSRLATWLVRIAVNEALGRLRRKSAEVIPLEAAMASPEPEIQAALTEAPGRSPEQAAARAQMRTLMEARIDLLPDAFRTVFVLRAVEELSVEDVAQALDIPEATVRTRFFRARSLLRESIAQAMDVALDEAFAFDGERCDRIVAGVLARGRMEGLAGKA*