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SCNpilot_cont_300_bf_scaffold_1330_curated_28

Organism: scnpilot_dereplicated_Sphingomonas_3

near complete RP 46 / 55 MC: 5 BSCG 45 / 51 MC: 4 ASCG 11 / 38
Location: comp(28127..28531)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.6
  • Coverage: 134.0
  • Bit_score: 216
  • Evalue 2.10e-53
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] similarity KEGG
DB: KEGG
  • Identity: 72.6
  • Coverage: 135.0
  • Bit_score: 186
  • Evalue 4.10e-45
ribosomal large subunit pseudouridine synthase D n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB948 similarity UNIREF
DB: UNIREF100
  • Identity: 82.8
  • Coverage: 134.0
  • Bit_score: 222
  • Evalue 3.60e-55

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Taxonomy

Sphingomonas taxi → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 405
GTGCCGGCCCCGCCCGCGGGCAAGGTCGATGCCCCGCTGGCGCGCAGCCCGCAGAACCGCAAGAAGATCGCGATCGTCGCGACCGGCAAGCGCGCCGTCACGCATTACCGCACGGTCGAGCGGCTGCGGCGCGACGCGGCTTTGGTCGAATGCCGGCTGGAAACGGGGCGGACGCATCAGGTGCGCGTCCATATGGCCTCGCTCGGCCACGCCCTGCTCGGCGACCCGGTCTACGGGCGGACCAAACAGGCGCACCGTGCGATCCTCGAAACGCTCGGTTTCCGACGGCAGGCCTTGCACGCGGCGCGGCTGGGGTTCATCCATCCGATAACAAGAACCGCTTTATCATTCGATAGCGCAATGCCTGCTGACATGCAGGAACTGTTCATTCAGCTCAACGTATAG
PROTEIN sequence
Length: 135
VPAPPAGKVDAPLARSPQNRKKIAIVATGKRAVTHYRTVERLRRDAALVECRLETGRTHQVRVHMASLGHALLGDPVYGRTKQAHRAILETLGFRRQALHAARLGFIHPITRTALSFDSAMPADMQELFIQLNV*