ggKbase home page

scnpilot_dereplicated_Thiobacillus_6

scnpilot-dereplicated_Hydrogenophilales_65_1
In projects: scnpilot-dereplicated  |  SCNPILOT_BF_INOC_REDO

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 1-50 of 222 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_sub60_scaffold_1331_curated
Species: Thiobacillus denitrificans (50%)
2 2566 bp 66.10 1.00 94.82
scnpilot_p_inoc_sub60_scaffold_1661_curated
Species: GWE1_Thiobacillus_62_9_curated (60%)
5 2581 bp 67.80 1.00 94.15
scnpilot_p_inoc_sub60_scaffold_1652_curated
Species: GWE1_Thiobacillus_62_9_curated (100%)
5 2667 bp 63.59 1.00 92.80
scnpilot_p_inoc_sub60_scaffold_1044_curated
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 2743 bp 65.22 1.00 93.51
scnpilot_p_inoc_sub60_scaffold_1213_curated
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 2793 bp 61.40 1.00 92.05
scnpilot_p_inoc_sub60_scaffold_1259_curated
Class: Betaproteobacteria (66.67%)
3 2909 bp 67.96 1.00 86.11
scnpilot_p_inoc_sub60_scaffold_1635_curated
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 3037 bp 60.42 1.00 76.95
scnpilot_p_inoc_sub60_scaffold_1494_curated
Species: GWE1_Thiobacillus_62_9_curated (75%)
4 3067 bp 66.19 1.00 93.90
scnpilot_p_inoc_sub60_scaffold_1404_curated
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 3122 bp 64.22 1.00 93.79
scnpilot_p_inoc_sub60_scaffold_1578_curated
Species: GWE1_Thiobacillus_62_9_curated (71.43%)
7 3200 bp 63.38 1.00 89.06
scnpilot_p_inoc_sub60_scaffold_1000_curated
Species: Collimonas arenae (50%)
6 3240 bp 59.78 1.00 83.06
scnpilot_p_inoc_sub60_scaffold_2285_curated
Species: GWE1_Thiobacillus_62_9_curated (60%)
5 3257 bp 70.37 1.00 100.12
scnpilot_p_inoc_sub60_scaffold_1222_curated
Species: Thiobacillus denitrificans (66.67%)
3 3262 bp 67.29 1.00 96.57
scnpilot_p_inoc_sub60_scaffold_978_curated
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 3276 bp 66.48 1.00 92.03
scnpilot_p_inoc_sub60_scaffold_1374_curated
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 3293 bp 61.13 1.00 96.20
scnpilot_p_inoc_sub60_scaffold_1061_curated
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 3307 bp 62.17 1.00 99.33
scnpilot_p_inoc_sub60_scaffold_1387_curated
Species: Thiobacillus denitrificans (50%)
4 3345 bp 63.29 1.00 95.87
scnpilot_p_inoc_sub60_scaffold_841_curated
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (80%)
5 3438 bp 65.91 1.00 93.28
scnpilot_p_inoc_sub60_scaffold_1941_curated
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 3491 bp 66.63 1.00 94.19
scnpilot_p_inoc_sub60_scaffold_1013_curated
Order: Hydrogenophilales (80%)
5 3545 bp 66.69 1.00 97.83
scnpilot_p_inoc_sub60_scaffold_1446_curated
Species: Thiobacillus denitrificans (100%)
2 3564 bp 63.92 1.00 100.00
scnpilot_p_inoc_sub60_scaffold_886_curated
Species: GWE1_Thiobacillus_62_9_curated (75%)
4 3626 bp 56.87 1.00 93.49
scnpilot_p_inoc_sub60_scaffold_994_curated
Order: Hydrogenophilales (85.71%)
7 3784 bp 64.19 1.00 93.95
scnpilot_p_inoc_sub60_scaffold_1021_curated
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
4 3848 bp 68.22 1.00 91.29
scnpilot_p_inoc_sub60_scaffold_971_curated
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 3970 bp 64.23 1.00 86.90
scnpilot_p_inoc_sub60_scaffold_940_curated
Order: Hydrogenophilales (100%)
5 3973 bp 69.47 1.00 93.63
scnpilot_p_inoc_sub60_scaffold_850_curated
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 4169 bp 62.82 1.00 94.12
scnpilot_p_inoc_sub60_scaffold_674_curated
Order: Hydrogenophilales (85.71%)
7 4177 bp 65.84 1.00 95.38
scnpilot_p_inoc_sub60_scaffold_838_curated
Class: Gammaproteobacteria (60%)
5 4189 bp 56.74 1.00 77.13
scnpilot_p_inoc_sub60_scaffold_746_curated
Species: GWE1_Thiobacillus_62_9_curated (57.14%)
7 4288 bp 66.98 1.00 95.43
scnpilot_p_inoc_sub60_scaffold_622_curated
Order: Hydrogenophilales (100%)
6 4329 bp 64.91 1.00 98.06
scnpilot_p_inoc_sub60_scaffold_717_curated
Species: GWE1_Thiobacillus_62_9_curated (75%)
4 4339 bp 64.25 1.00 96.04
scnpilot_p_inoc_sub60_scaffold_843_curated
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 4411 bp 66.02 1.00 97.12
scnpilot_p_inoc_sub60_scaffold_775_curated
Order: Hydrogenophilales (60%)
5 4488 bp 64.02 1.00 84.96
scnpilot_p_inoc_sub60_scaffold_687_curated
Order: Hydrogenophilales (100%)
5 4587 bp 66.03 1.00 93.79
scnpilot_p_inoc_sub60_scaffold_730_curated
Species: GWE1_Thiobacillus_62_9_curated (50%)
6 4596 bp 68.06 1.00 89.56
scnpilot_p_inoc_sub60_scaffold_923_curated
Order: Hydrogenophilales (62.5%)
8 4684 bp 65.16 1.00 93.00
scnpilot_p_inoc_sub60_scaffold_649_curated
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
7 4782 bp 64.47 1.00 89.46
scnpilot_p_inoc_sub60_scaffold_632_curated
Order: Hydrogenophilales (50%)
6 4790 bp 62.57 1.00 90.13
scnpilot_p_inoc_sub60_scaffold_692_curated
Species: Thiobacillus denitrificans (66.67%)
7 4821 bp 60.28 1.00 88.92
scnpilot_p_inoc_sub60_scaffold_665_curated
Order: Hydrogenophilales (80%)
5 4933 bp 68.23 1.00 88.79
scnpilot_p_inoc_sub60_scaffold_702_curated
Order: Hydrogenophilales (80%)
5 4936 bp 64.61 1.00 85.51
scnpilot_p_inoc_sub60_scaffold_673_curated
Class: Betaproteobacteria (71.43%)
7 4976 bp 57.32 1.00 83.32
scnpilot_p_inoc_sub60_scaffold_541_curated
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 5024 bp 64.89 1.00 89.33
scnpilot_p_inoc_sub60_scaffold_601_curated
Species: GWE1_Thiobacillus_62_9_curated (50%)
8 5051 bp 66.26 1.00 92.30
scnpilot_p_inoc_sub60_scaffold_675_curated
Order: Hydrogenophilales (100%)
5 5055 bp 65.56 1.00 95.07
scnpilot_p_inoc_sub60_scaffold_569_curated
Species: GWE1_Thiobacillus_62_9_curated (80%)
6 5178 bp 64.12 1.00 89.51
scnpilot_p_inoc_sub60_scaffold_576_curated
Species: GWE1_Thiobacillus_62_9_curated (57.14%)
7 5273 bp 64.86 1.00 93.02
scnpilot_p_inoc_sub60_scaffold_626_curated
Order: Hydrogenophilales (85.71%)
7 5361 bp 65.86 1.00 96.53
scnpilot_p_inoc_sub60_scaffold_657_curated
Species: GWE1_Thiobacillus_62_9_curated (50%)
8 5387 bp 62.98 1.00 86.43
Displaying items 1-50 of 222 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.