ggKbase home page

SCNpilot_expt_1000_bf_scaffold_403_curated_15

Organism: scnpilot_dereplicated_Thiobacillus_5

near complete RP 51 / 55 BSCG 51 / 51 ASCG 12 / 38 MC: 1
Location: comp(15454..16164)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor FliA n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJM1_THIDA similarity UNIREF
DB: UNIREF100
  • Identity: 94.9
  • Coverage: 236.0
  • Bit_score: 448
  • Evalue 4.20e-123
RNA polymerase sigma-70 factor; K02405 RNA polymerase sigma factor for flagellar operon FliA similarity KEGG
DB: KEGG
  • Identity: 94.9
  • Coverage: 236.0
  • Bit_score: 448
  • Evalue 1.30e-123
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.9
  • Coverage: 236.0
  • Bit_score: 448
  • Evalue 5.90e-123

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 711
ATGGCTGGTAAGCCTTCGTCCCAGGACGAACAGATCACCAAGTATGCGCCACTGGTCAAGCGCATCGCGTATCACATGATGGCGCGCCTGCCCGCCAGCGTCGAAGTCGATGACCTGATCCAGGTCGGACTCATTGGGCTGATGGATGCCGTGGCGCGCTTCGACGGCACGCAGGGTGCACAATTCGAATCCTATGCCACGCAGCGCATCCGCGGGGCCATGCTCGACGAACTGCGCGAGGCCGACTGGCTGCCGCGCCACGTGCGGCAGAAGTCGCGCCAGATCGAGGCGGCGATCAGCCGCCTGGAACAGCGTCACGGCAAGTCGCCGAGCGAACAGGAAATCTCCGCCGAACTCGGCCTGCCGATCGCCCAGTACCAGGCGATGCTGGGCGACGTGAAATGCTCGCAACTCCTGTACTACGAGGATTTTTCCGACGAGGACAGCGCGAGTTTCCTGGAACGCTATCTGGTCGACGGCAGCAGCGATCCGCTCGCCCTGCTGGAAGACGAGGGCTTCCGCGCGAGCCTCATCGCCGCGATCCATCACCTGCCGGAACGCGAGCGCAGCATGATGGGCATGTACTACGAACAGGACATGAACCTCAAGGAAATCGGCGCGGTACTGGGTGTCTCCGAATCGCGCGTGTGCCAGCTGCATTCGCAGGCCGTCGCACGCCTGCGCGCCCAGCTCAAGGTCTGGAAGGACTGA
PROTEIN sequence
Length: 237
MAGKPSSQDEQITKYAPLVKRIAYHMMARLPASVEVDDLIQVGLIGLMDAVARFDGTQGAQFESYATQRIRGAMLDELREADWLPRHVRQKSRQIEAAISRLEQRHGKSPSEQEISAELGLPIAQYQAMLGDVKCSQLLYYEDFSDEDSASFLERYLVDGSSDPLALLEDEGFRASLIAAIHHLPERERSMMGMYYEQDMNLKEIGAVLGVSESRVCQLHSQAVARLRAQLKVWKD*