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SCNpilot_cont_300_bf_scaffold_83_curated_61

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 60476..61711

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase sigma factor containing a TPR repeat domain containing protein n=1 Tax=Variovorax sp. CF313 RepID=J3CH54_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 89.0
  • Coverage: 409.0
  • Bit_score: 718
  • Evalue 2.90e-204
Putative RNA polymerase sigma factor containing a TPR repeat domain containing protein {ECO:0000313|EMBL:EJL71306.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.0
  • Coverage: 409.0
  • Bit_score: 718
  • Evalue 4.00e-204
putative RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 86.8
  • Coverage: 408.0
  • Bit_score: 697
  • Evalue 2.80e-198

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1236
ATGACGCAGGACCCGGCGGCTCATCAGGCCGCCGAGCGCGCGGCGCGGGACTCGTACGGGCGGCTGCTGGCCATCCTGTCGGCCCGCACGCACGACATCGCGGCGTCGGAAGACGCCCTGGCCGACGCCTTCGCCCGCGCTCTGGAACGCTGGCCGGCCGACGGCATCCCGGACAGGCCCGATGCCTGGCTGCTGAGCGTCGCGCGGCACCGCAAGCTCGACGCCTGGCGCCACACCCGCGTGCAGGACGAGGCCACGCAGGCGCTGATGCTGCTGGCCGGCGAGGTCGACGGCAGCGACGCCGACGGCGCGGCCGTGCCCGACGAGCGGCTGCGCCTGCTCTTCGTCTGCGCGCACCCAGCCATCGACGCGCCGGCCCGCGCGCCGCTGATGCTCCAGACCGTGCTCGGCCTCGATGCGGCGCGCATGGCCAGCGCCTTCCTGACATCGCCATCGACGCTCGGCCAGCGGCTGGTGCGCGCCAAGGCACGCATCCGCGCCGCCGGCATTCCCTTCGAATACCCGCAGGCGCGCGAGCTGCCGCAGCGGCTGCAGGACGTGCTCGACGGCATCTACGCCGCCTACGGCACCGGCTGGGACGACGTCGACGGCGCCGACGCCATTCCGCGCAATCTCACGGCCGAGGCCATCGATCTCGGCCGCATCTTGTGCAACCTGATGCCGCGCGAGCCCGAGCCGCTGGGCCTGCTCGCGCTCATGCTGTTCTGCGAGGCACGCACCGCCGCGCGCCGCAACGACGCGGGCGCGTACGTGCCGCTCGACCAGCAGGACATCACGCGCTGGAACCACCAGTTGCTGGCCGAGGCCGAGCACCACCTGCGGCACGCCTCGTCGATGCAGGCGCTGGGCGCCTACCAGCTGGAGGCCGCCATCCAGTCGGCCCACTGCGAACGCCGGGCCGGCGCGTCCGTGCCGGCCGAGACCCTGGTGTCGCTCTACGAGGGCCTGCTGGCGCTGCGCCACAGCATCGGCGCGCAGGTCAGCCTGGCTTGCGCGCTGGCCAACGCACGCGGGCCGGAAACCGGATTGCAGGCACTCGACGCGATTCCTGCTGCGGATGTCACGAACTACCAGCCGTTCTGGGCGGCCCGCGCCCATCTGCTGGCCGCGGGCGGCGCACGCGCGGCGTCGCGGCAGGCCTACGACCGGGCGATCGGCCTGAGCACCAGCGCCGTGGTGCGGGCCTATCTCAATGCGATGTCGCAGCGGCTCTGA
PROTEIN sequence
Length: 412
MTQDPAAHQAAERAARDSYGRLLAILSARTHDIAASEDALADAFARALERWPADGIPDRPDAWLLSVARHRKLDAWRHTRVQDEATQALMLLAGEVDGSDADGAAVPDERLRLLFVCAHPAIDAPARAPLMLQTVLGLDAARMASAFLTSPSTLGQRLVRAKARIRAAGIPFEYPQARELPQRLQDVLDGIYAAYGTGWDDVDGADAIPRNLTAEAIDLGRILCNLMPREPEPLGLLALMLFCEARTAARRNDAGAYVPLDQQDITRWNHQLLAEAEHHLRHASSMQALGAYQLEAAIQSAHCERRAGASVPAETLVSLYEGLLALRHSIGAQVSLACALANARGPETGLQALDAIPAADVTNYQPFWAARAHLLAAGGARAASRQAYDRAIGLSTSAVVRAYLNAMSQRL*