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SCNpilot_cont_300_bf_scaffold_83_curated_75

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(77349..78542)

Top 3 Functional Annotations

Value Algorithm Source
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00035F64C0 similarity UNIREF
DB: UNIREF100
  • Identity: 97.0
  • Coverage: 397.0
  • Bit_score: 764
  • Evalue 4.40e-218
Variovorax paradoxus strain MEDvA23 contig_81, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22923.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.2
  • Coverage: 397.0
  • Bit_score: 742
  • Evalue 3.30e-211
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 93.2
  • Coverage: 398.0
  • Bit_score: 732
  • Evalue 7.60e-209

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1194
ATGAAAAAGACAGCTGTGTTCTCGGCCGTTTCGCTTGCCATCGCGTTGGCCGCCGGCGCCGCGCAGGCGCAGGAGAAGGTCAAGATCGGTTTCATCACCGACATGTCGAGCCTCTATGCCGACGTGGAGGGCAAGAACGGCGCCCTCGCGATCCAGATGGCCATCGACGACTTCGGCGGCAAGGTCAACGGCATGCCCATCGAGCTGCTGCAGGCCGATCACCAGAACAAGGCCGACATCGCAGCTTCCAAGGCGCGCGAGTGGATCGACACGCAGGGCCTGACGATGCTGTTCGGCGGCACCAGCTCGGGCACCGGCCTGGCCATGGCCAAGGTGGCGCAGGAGAAGAAGCGAGTGTTCATCGTGAACGGCGCGGGCAGCTCGGCGCTCACCAACGAACAATGCAGCCCCTACACCGTGCACTACGCCTACGACACCGTGGCGCTGGCCAAGGGCACCGGCAGCGCCGTCATCGCGCGCGGCGACAAGAGCTGGTTCTTCCTGACGGCCGACTACGCCTTCGGACAGGCCCTGGAAGCCGATGCCTCCAAGGTCGTGAAGGAGAAGGGCGGCACCGTGGTGGGGAGCGTGAAGCATCCGCTGAATACCTCGGACTTCTCTTCTTTCCTGCTGCAGGCGCAGAACTCCAAGGCCCAGGTGCTGGCGCTCGCGAACGCGGGCGGCGACACGCAGAACGCGATCAAGGCGGCGAAGGAATTCGGCATCTCCAAGACCATGAAGATGGTCGGCCTGCTGGTGTTCGTGACCGACGTGCACAGCCTGGGCCTGAAGAACACCGAAGGCCTGCTGCTCACCACCAGCTGGGACTGGAACCTCGACGACAAGACGCGCGCCTTCGGCAAGCGCTTCTTCGAGAAGACCAAGCGCATGCCCACCGACATCCAGGCCGCCGACTACTCGGCCACCATGACCTACCTGAAGGCCGTGCAGGCTGCCAAGTCGATCGATGCCGACACTGTCATGGCGCAGATCAAGAAGACGCCGATCGACGACTTCTACGCCAAGGGCTTCGTGCGCGAGGACGGCCGCTTCGTGCACGACATGTACCTGGTGCAGGTCAAGTCGCCGGCCGAGTCCAAGCAGCCATGGGACTACTACAAGGTGGTCCAGAAGCTGAAGGGCGAAGAGGTCTTCACCACCAAAGCCGAAAGCAAGTGCGCATTGTGGAAGTAA
PROTEIN sequence
Length: 398
MKKTAVFSAVSLAIALAAGAAQAQEKVKIGFITDMSSLYADVEGKNGALAIQMAIDDFGGKVNGMPIELLQADHQNKADIAASKAREWIDTQGLTMLFGGTSSGTGLAMAKVAQEKKRVFIVNGAGSSALTNEQCSPYTVHYAYDTVALAKGTGSAVIARGDKSWFFLTADYAFGQALEADASKVVKEKGGTVVGSVKHPLNTSDFSSFLLQAQNSKAQVLALANAGGDTQNAIKAAKEFGISKTMKMVGLLVFVTDVHSLGLKNTEGLLLTTSWDWNLDDKTRAFGKRFFEKTKRMPTDIQAADYSATMTYLKAVQAAKSIDADTVMAQIKKTPIDDFYAKGFVREDGRFVHDMYLVQVKSPAESKQPWDYYKVVQKLKGEEVFTTKAESKCALWK*