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SCNpilot_cont_300_bf_scaffold_116_curated_10

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(26976..27506)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CUF5_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 57.5
  • Coverage: 174.0
  • Bit_score: 196
  • Evalue 1.60e-47
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 57.5
  • Coverage: 174.0
  • Bit_score: 196
  • Evalue 5.10e-48
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACS20368.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.5
  • Coverage: 174.0
  • Bit_score: 196
  • Evalue 2.30e-47

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 531
ATGGACATGTCGCTGCAGCCAGCCGAGCCCACGTTGGGGGAGGTCTTCATCGCAAACCGTCCCCAGCTCCAGCGCGTCGCGCAAAAGATCGTCCGCACCGCAGACCTGGCCGATGAAGTGCTGCAGGACGCCTACCTCAAGCTGGCCGACGGCGCCGCCGTGCGCGACGTGCGCAAGCCGCTCGGCTACTGCTGTCAGGTGGTGCGCAACGTGGCCTTCGACTATCACCGCCATCATTCCGTCGAAGCCAGCTACCGCACCTACTGCGAGGACGTGGAGCTTGTCAGTCCGCCGAGCAACGATGCACCCGAGCGCGTGCTGGACGGGCGCCAGGCGCTGGCCGCGATCGACCGCGTGCTCGACGCGCTGCCCGCGCGCACCCGCACGGCCTTCGAGCTCAACCGGCTGAGCGGCATGACGCAGCGCGAGATCGGTGTGCGGCTCGGCTGCTCCGCCACGCTGGTGAACTTCATGATCAAGGACGCCGACGCGGCCCTCGAAAGCTGCCGCTACCTGGTGCAGGGCGGCTGA
PROTEIN sequence
Length: 177
MDMSLQPAEPTLGEVFIANRPQLQRVAQKIVRTADLADEVLQDAYLKLADGAAVRDVRKPLGYCCQVVRNVAFDYHRHHSVEASYRTYCEDVELVSPPSNDAPERVLDGRQALAAIDRVLDALPARTRTAFELNRLSGMTQREIGVRLGCSATLVNFMIKDADAALESCRYLVQGG*