ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

SCNpilot_cont_300_bf_scaffold_118_curated_154

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 136371..137984

Top 3 Functional Annotations

Value Algorithm Source
AMP-dependent synthetase n=1 Tax=Variovorax paradoxus RepID=UPI00036930A6 similarity UNIREF
DB: UNIREF100
  • Identity: 92.2
  • Coverage: 537.0
  • Bit_score: 1015
  • Evalue 1.90e-293
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EJL72011.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.2
  • Coverage: 537.0
  • Bit_score: 1013
  • Evalue 7.90e-293
putative ligase similarity KEGG
DB: KEGG
  • Identity: 90.5
  • Coverage: 537.0
  • Bit_score: 993
  • Evalue 1.90e-287

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1614
ATGGAGACAATGCCCGAACGCCCCCAGCAGCCCCTGCACGAATACCTGCGCACCCACGCGCGCGAGCGCGGCGCCAGCGCCGCCTGCATCTGGTACGGCCACGCCATGAGCTGGGCCGAACTCGACCGCGCGAGCGACGCCTTCGCGGCGCGGCTGCAGGCCCTCGGCGTGAAGAAGGGCGAACCGGTGGTGCTCTTCCTGAACAACTGTCCGCAGTACCTGGTGGCGCACTTCGGCATCCAGAAGATCGGCGCCATCGTCTGCCCGAGCGGTCCGCTCAACAAGGAGCACGAGCTGGCCTACCAGGTCAACGACCTGAAGGCGCGCGTGATCGTCGCGGCCGCGCCGCTGCTGCCGGTGGTGCGCAAGGTGCAGCCTGAAAGCGCGCTCGAGCATGTGTTCGCGGTGCACTACGCCGACCTGCTGTCCGCCGAACCCTCGCTCGACCTGCCGGCCGAACTGGCCGTGGAGCACAACGCGGCGCGCACCGTGCCCGAGGGCTGCGAAGATTTCCTCGCGGTGATGAAGTCCGACGCCAGGCCGCAGCCCGTGGCCATCGAGATGGACGACGTGGCGCTCATGACCTACACATCCGGCACCACCGGCCTGCCCAAGGGCGCGATGCTGAGCTACGGCAATGCGCTCTTCAAGACGCGCGCCGCGGCCGACTGCAACGGCGTGGGCCCGGCCGACGTGCTGCTGTCCATCGCGCCGCTGTATCACATCGCCGGCATGCTGATGGGCGTGAACGTGCCAGTGCTCAGCGGCGCGACCTCGGTGCTGCTGCACCGCTTCGATCCGCGCGCCGTGCTGCAGGCCATCGCCAGCTTCAAGGTGAGCTGGTGGTACAGCATCGCGCCGATGAACGTGGCCTGCATGCAGGTGCCGGACATCGCCGGCTTCGACCTGTCGAGCCTGAAGATGAACCCGGTGACCAGCTTCGGCATCACCTTCACCGAACCGCTGGCGCAGCAGTGGCGCTCGCATGCGCCGAACTGCACTTCGTTCGAGGCCGCCTACGGCCTGAGCGAGACCCATACCTGCGACACCTACACGCCGCACCATGCGCCGCGCTGGGGCACGCAAGGCATCGCGGTGCCGGGCGTGACCATCCGCATCATCGACACCGAGACGCAGGCCGACATGCCCGCCGGCGAAGTCGGCGAGATCGTGCTCACCAGCCCCGGCTCGTTCAAGGGCTACTGGAACAAGCCCGAAGCCACCGCCGCCACGCTGCGCAACGGCTGGGTGCACACCGGCGACATGGGCAAGCTCGATGCCGACGGCTACCTCACCTTCATCGGCCGCTTCAAGGAAATGATCAAGGTCTCGGGCTACAGCGTGTTCCCGGAAGAGGTCGAGACCATTCTCATCAAGCATCCGGCGGTGGCGCAGGCGGCGGTCATCGCGCAGCCCGACGCGGAGAAGGGCGAGGTGGTGAAGGCCTTCATCGTGCGCAAGCCCGGCGCCGCGCTGGAGGCCGACGCGCTCGTGGCCTGGGCGCGCGACAACATGGCAAGCTACAAGGCGCCGCGCGCCGTGAGCTTCATCGACGCACTGCCGACCACCGGCGCCGGCAAGGTGCTGCGCCGGCTGCTCAAAGACAAAAGCTGA
PROTEIN sequence
Length: 538
METMPERPQQPLHEYLRTHARERGASAACIWYGHAMSWAELDRASDAFAARLQALGVKKGEPVVLFLNNCPQYLVAHFGIQKIGAIVCPSGPLNKEHELAYQVNDLKARVIVAAAPLLPVVRKVQPESALEHVFAVHYADLLSAEPSLDLPAELAVEHNAARTVPEGCEDFLAVMKSDARPQPVAIEMDDVALMTYTSGTTGLPKGAMLSYGNALFKTRAAADCNGVGPADVLLSIAPLYHIAGMLMGVNVPVLSGATSVLLHRFDPRAVLQAIASFKVSWWYSIAPMNVACMQVPDIAGFDLSSLKMNPVTSFGITFTEPLAQQWRSHAPNCTSFEAAYGLSETHTCDTYTPHHAPRWGTQGIAVPGVTIRIIDTETQADMPAGEVGEIVLTSPGSFKGYWNKPEATAATLRNGWVHTGDMGKLDADGYLTFIGRFKEMIKVSGYSVFPEEVETILIKHPAVAQAAVIAQPDAEKGEVVKAFIVRKPGAALEADALVAWARDNMASYKAPRAVSFIDALPTTGAGKVLRRLLKDKS*