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SCNpilot_cont_300_bf_scaffold_118_curated_34

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(21746..22453)

Top 3 Functional Annotations

Value Algorithm Source
AraC family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00037B3700 similarity UNIREF
DB: UNIREF100
  • Identity: 81.3
  • Coverage: 235.0
  • Bit_score: 394
  • Evalue 5.50e-107
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EJL78261.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.9
  • Coverage: 236.0
  • Bit_score: 392
  • Evalue 3.80e-106
Cupin 2 barrel domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 78.8
  • Coverage: 226.0
  • Bit_score: 360
  • Evalue 4.70e-97

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 708
ATGCCCGCCACCGGTTCTTCCCCGTCGCCCCGCCATGAACTCGCCCTGCGCGACTACGGCCGCTCGCACGGCAGCCACGCGCACGACCACTTCCAGGTGCTGATCGGCCTGCACGGCGTGCTCGAGATCGAAGTGGAAGGCCGGGGCGCCGGCATCGGCGCGGGCGAGGCGCAAGTGATTGCACCGGGCGAGCGCCATGACTTCAACGGGCGCAAGCACGGCAGCCTGTGCCTGGTGCTCGACACCACGCAGCCGGCCTGGGCCCGCTGCGCGGAGCGCGCACCGCCCGCCGCAACGCGGCTGCACACGCTGGCTCACTACCTGGCGCAATGCATGAGGCAGCCGCAGGCTTCGGCACTGGCCCTGCTGCACGGTCCAGCGCTGCTGCTGGAGGCCTGGAGCCCGGAGCCGGCCTCTCCGGATTCGCGCCGTCGCCGCATCGACTGGGCGCTGCTCACCGACTGGGCCCGCGCCCGCTGGCATGAACCGCTGGGCGTGGCCGACCTGGCCGATGTCGCCTGCCTGAGCCCGAGCCAGTTCGCGCAGCGCTGCCGCGAAGAACAGGGCACGAGCCCGATGCACTGGCTGCGCGCGCTGCGGCTGGCGCATGCGCGCGAGCTGCGGCTCGGCGGCCTGGACGTGGCGGAGACGGCGCGCCGCACCGGCTATCGCTCGCCGTCGGCGCTGACCGCCGCGCTGCGCCGCTGA
PROTEIN sequence
Length: 236
MPATGSSPSPRHELALRDYGRSHGSHAHDHFQVLIGLHGVLEIEVEGRGAGIGAGEAQVIAPGERHDFNGRKHGSLCLVLDTTQPAWARCAERAPPAATRLHTLAHYLAQCMRQPQASALALLHGPALLLEAWSPEPASPDSRRRRIDWALLTDWARARWHEPLGVADLADVACLSPSQFAQRCREEQGTSPMHWLRALRLAHARELRLGGLDVAETARRTGYRSPSALTAALRR*