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scnpilot_expt_750_bf_scaffold_349_curated_6

Organism: scnpilot_dereplicated_Sphingobacteriales_8

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(8461..9045)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EH42_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 46.9
  • Coverage: 177.0
  • Bit_score: 178
  • Evalue 8.70e-42
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EDM35123.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.9
  • Coverage: 177.0
  • Bit_score: 178
  • Evalue 1.20e-41
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 42.6
  • Coverage: 190.0
  • Bit_score: 160
  • Evalue 7.70e-37

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Taxonomy

Pedobacter sp. BAL39 → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 585
ATGTATCACCAACTGACTGACGATGCTTTGATGCGATTGCTGCGTAACAGTGATGCGGCGGCATTTGCAGAGATATACCGGAGATACTGGGAACGGCTGGCGCTGCAGGTGCTAAGGGTAATACATTCGAGGGAAGATGCCAGGGATATTGTTCAGGAGGTGTTTGTTTCCATCTGGAAACGCCGTATGGAAATTGAAGTGAAGGGACCCCTGATAGGGTATCTCCTGAAAAGTGTGCGGAATATAGCTATACGGTACATTGAAAAGAATATCACCCGTGATCATTATTTACAAACATTATCTGATAATATAGTTGCGAATGAAGCTGATCCTGCCGGGTATTGCGAATACAGGGAATTACAGCATAAATTAAAGCAGGCTGTTGCAAGCCTGCCTCTTAAAATGCAGGAGGTATATCTTTTAAGCCGCAACGAGAAAATGTCTTATAAAGAGATCGCAGACCGCCTGGGTATTGCGGAAAATACAGTGAGAAAACAATTAAGCAATGCGCTTAAATTGCTTCGGACTTCAGTAAGCGAGCTTACAATATCGATGCTTGTATGCCTGGCAACAAGATTTTTTTGA
PROTEIN sequence
Length: 195
MYHQLTDDALMRLLRNSDAAAFAEIYRRYWERLALQVLRVIHSREDARDIVQEVFVSIWKRRMEIEVKGPLIGYLLKSVRNIAIRYIEKNITRDHYLQTLSDNIVANEADPAGYCEYRELQHKLKQAVASLPLKMQEVYLLSRNEKMSYKEIADRLGIAENTVRKQLSNALKLLRTSVSELTISMLVCLATRFF*