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SCNpilot_expt_1000_bf_scaffold_8854_curated

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8854_curated_1
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(2..241)
DNA (240bp) protein (80aa)
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
SCNpilot_expt_1000_bf_scaffold_8854_curated_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

933..1454
DNA (522bp) protein (174aa)
cell division protein FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
Cell divisionFtsK/SpoIIIE n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSN7_PARL1
Cell divisionFtsK/SpoIIIE {ECO:0000313|EMBL:ABS62920.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_8854_curated_3
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1696..2364)
DNA (669bp) protein (223aa)
Tax=RBG_16_Deltaproteobacteria_49_23_curated
hypothetical protein
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XWS4_LEPCP
SCNpilot_expt_1000_bf_scaffold_8854_curated_4
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

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2617..3039
DNA (423bp) protein (141aa)
membrane-flanked domain protein
Membrane-flanked domain protein n=1 Tax=Micavibrio aeruginosavorus EPB RepID=M4VX22_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AEP09301.1}; TaxID=856793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" source="Micavibrio aeruginosavorus (strain ARL-13).;"
SCNpilot_expt_1000_bf_scaffold_8854_curated_trna_1
unknown

Not on your lists

3175..3248
DNA (74bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_8854_curated_5
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3541..3957
DNA (417bp) protein (139aa)
molecular chaperone DnaK n=1 Tax=Amorphus coralli RepID=UPI0003643E83
TraR/DksA family transcriptional regulator; K06204 DnaK suppressor protein
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_8854_curated_6
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4363..5085)
DNA (723bp) protein (241aa)
flgH1; flagellar L-ring protein FlgH; K02393 flagellar L-ring protein precursor FlgH
Flagellar L-ring protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z7Q4_AZOL4
Flagellar L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Basal body L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Flags: Precursor;; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_1000_bf_scaffold_8854_curated_7
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5095..5577)
DNA (483bp) protein (161aa)
flgA; flagellar basal body P-ring biosynthesis protein FlgA; K02386 flagella basal body P-ring formation protein FlgA
Flagella basal body P-ring formation protein FlgA, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IT35_RHOCS
Flagella basal body P-ring formation protein FlgA, putative {ECO:0000313|EMBL:ACI98793.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_1000_bf_scaffold_8854_curated_8
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(5667..6455)
DNA (789bp) protein (263aa)
flagellar basal body rod protein FlgG n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD6B5 rbh
flgG; flagellar basal body rod protein FlgG; K02392 flagellar basal-body rod protein FlgG rbh
Flagellar basal body rod protein FlgG {ECO:0000313|EMBL:KIF13331.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
SCNpilot_expt_1000_bf_scaffold_8854_curated_9
unknown

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comp(6468..6572)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8854_curated_10
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6547..7179)
DNA (633bp) protein (211aa)
flgF; flagellar basal-body rod protein flgF; K02391 flagellar basal-body rod protein FlgF
Flagellar basal-body rod protein flgF n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CB49_METED
Flagellar basal-body rod protein flgF {ECO:0000313|EMBL:CAX25461.1}; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
SCNpilot_expt_1000_bf_scaffold_8854_curated_11
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7391..7930
DNA (540bp) protein (180aa)
Flagellar FliL protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HN27_9BRAD
Flagellar FliL protein {ECO:0000313|EMBL:ERF86208.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
fliL; basal body-associated protein; K02415 flagellar FliL protein
SCNpilot_expt_1000_bf_scaffold_8854_curated_12
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8579..8764)
DNA (186bp) protein (62aa)
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
SCNpilot_expt_1000_bf_scaffold_8854_curated_13
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8801..9022)
DNA (222bp) protein (74aa)
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
SCNpilot_expt_1000_bf_scaffold_8854_curated_14
unknown

Not on your lists

9454..9573
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8854_curated_15
Brevundimonas sp. KM4, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9570..10364
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI00035F7572
Uncharacterized protein {ECO:0000313|EMBL:KJV42352.1}; TaxID=1628191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. KM4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8854_curated_16
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10451..12436
DNA (1986bp) protein (662aa)
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F8F6_9PROT
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8854_curated_17
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12496..13794
DNA (1299bp) protein (433aa)
hypothetical protein rbh
Putative uncharacterized protein n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0ANA4_MARMM rbh
Uncharacterized protein {ECO:0000313|EMBL:ABI66233.1}; Flags: Precursor;; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_expt_1000_bf_scaffold_8854_curated_18
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13799..14560)
DNA (762bp) protein (254aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Caulobacter crescentus OR37 RepID=R0E445_CAUCE
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:ENZ80378.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
alpha/beta hydrolase
SCNpilot_expt_1000_bf_scaffold_8854_curated_19
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14557..15027)
DNA (471bp) protein (157aa)
nudix family hydrolase, putative; K08311 putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
RNA pyrophosphohydrolase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IWU4_RHOCS
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
SCNpilot_expt_1000_bf_scaffold_8854_curated_20
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15141..16220)
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003708570
Putative periplasmic protein {ECO:0000313|EMBL:ESR25333.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
hypothetical protein; K09798 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8854_curated_21
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16647..17111)
DNA (465bp) protein (155aa)
Peptidase S41 {ECO:0000313|EMBL:KJC42985.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
carboxyl-terminal protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102]
C-terminal processing peptidase-3. Serine peptidase. MEROPS family S41A n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J3J1_RHOP2
SCNpilot_expt_1000_bf_scaffold_8854_curated_22
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17151..17657)
DNA (507bp) protein (169aa)
ctpA; carboxy-terminal-processing peptidase S41A
Carboxy-terminal-processing peptidase S41A n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AIT0_AZOBR
Peptidase S41 {ECO:0000313|EMBL:AIB10837.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
Displaying 23 items

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