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SCNpilot_expt_1000_bf_scaffold_10030_curated_12

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(9460..10911)

Top 3 Functional Annotations

Value Algorithm Source
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSC6_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 90.5
  • Coverage: 483.0
  • Bit_score: 851
  • Evalue 3.30e-244
  • rbh
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; similarity UNIPROT
DB: UniProtKB
  • Identity: 90.5
  • Coverage: 483.0
  • Bit_score: 851
  • Evalue 4.70e-244
murE; UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] similarity KEGG
DB: KEGG
  • Identity: 79.6
  • Coverage: 486.0
  • Bit_score: 771
  • Evalue 1.40e-220
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1452
ATGAAGATCAGTGACCTTGCCGGACCTCAAACCAGCGACCTCAGCGCCGCAGCCGCCACGGAAATAGGCGGCATCACCAGCGACAGCCGGAAGGTCAGGCCGGGCGATCTCTTCGTTGCGCTTTCGGGCAGCAAGGCCGACGGCAGCGCCTTCATCGCCGATGCGGTCGCGCGCGGCGCCGCCGCCGTGGTGGTCGCCGAGGGCACGTCCGCGCAGGCGGCCGTTCCGGTCATTCCCGTCGAAAATCCGCGCCGTTTCCTGGCGCTCGCCGCCGCCCGCTTCCATGGCCGCCAGCCCGAGACCATGGTCGCCGTCACGGGCACGGCGGGCAAGACCTCCGTCGCCTCCTTCACGCGCCAGATCTGGGCGCATGCCGGCTACGCGGCTGCGATGATCGGCACGACCGGCGTCGTCGCGCCCGGCCGCAACGACTACGGCTCGCTGACGACGCCCGATCCGGTGTCGCTGCATGCGCTGCTCGCCGAGCTTGCCGATGCCGGCGTCACCCATGCCGCCATGGAGGCCTCCAGCCACGGCCTCGACCAGTCGCGCCTTGACGGCGTGAAGCTTTCCGCCGGCGCCTTCACCAATCTCGGCCGCGACCACATGGACTACCACCCGACGGTCGAGCACTACATGGCTTCCAAGATGCGGCTTTTCGATACGCTGCTGCCGAAGGGCGCGCCGGCCGTCATCTATGCCGACGACGAATGGTCGGGCGTGGCGATCGAGGCGGCGCGCAAGGCCGGCCTCGATGTGCGCACGGTCGGCCGCAAGGGCGACTATCTCACCTTGAAGCGGGTCGAGCATTTCCGCCACAAGCAGACCGCCGAGATCCATGCGGGCGGCGACATCCACGAAGTGCACATTCCGCTGGCAGGCGATTTCCAGGTCGCCAATGCGCTGGTCGCGGCGGGCCTTGCCCTGTCGACCGGCGTTTCCGCCTCCCTCGCCATGGCGGCGCTCGAAAAGCTGATCGGCGCGTCCGGCCGCCTCGAACTCGTCGGCCATGCCCGGAACGGCGCGCTCGCCTATGTCGACTATGCGCACAAGCCGGATGCGCTGGAAAACGTGCTGACCTCCGTGCGTCCCTTCACGACCGGCCGCGTCATCGTGGTCTTCGGCTGCGGCGGCGACCGCGACAAGGGCAAGCGGCCGATCATGGGCGAGATCGCCACGCGCCTTGCCGACGTGGTCATCGTCACCGACGACAATCCGCGCTCGGAGGTTGCCGAGGTCATCCGCTCCGAGATCATGGCGGCTGCCAGGGGGGCGACCGAGATCGGCGACCGCGCGGCGGCGATCCGCAGCGCCGTCGGGATGCTGCAATCGGGCGATACGCTGATCGTCGCCGGCAAGGGGCATGAGGAGGGGCAGACCGTCGGCTCCGTGACGCTGCCCTTCTCCGACCACGCCGAGCTCGGCAAGGCCTTGGAGGAACTCGACCGGTGA
PROTEIN sequence
Length: 484
MKISDLAGPQTSDLSAAAATEIGGITSDSRKVRPGDLFVALSGSKADGSAFIADAVARGAAAVVVAEGTSAQAAVPVIPVENPRRFLALAAARFHGRQPETMVAVTGTAGKTSVASFTRQIWAHAGYAAAMIGTTGVVAPGRNDYGSLTTPDPVSLHALLAELADAGVTHAAMEASSHGLDQSRLDGVKLSAGAFTNLGRDHMDYHPTVEHYMASKMRLFDTLLPKGAPAVIYADDEWSGVAIEAARKAGLDVRTVGRKGDYLTLKRVEHFRHKQTAEIHAGGDIHEVHIPLAGDFQVANALVAAGLALSTGVSASLAMAALEKLIGASGRLELVGHARNGALAYVDYAHKPDALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIATRLADVVIVTDDNPRSEVAEVIRSEIMAAARGATEIGDRAAAIRSAVGMLQSGDTLIVAGKGHEEGQTVGSVTLPFSDHAELGKALEELDR*