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SCNpilot_expt_1000_bf_scaffold_11619_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 4787..5371

Top 3 Functional Annotations

Value Algorithm Source
Flp pilus assembly protein TadC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ER40_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 90.0
  • Coverage: 120.0
  • Bit_score: 212
  • Evalue 5.40e-52
Flp pilus assembly protein TadC {ECO:0000313|EMBL:EYR80343.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.0
  • Coverage: 120.0
  • Bit_score: 212
  • Evalue 7.60e-52
tadC1; components of type IV pilus TadC; K12511 tight adherence protein C similarity KEGG
DB: KEGG
  • Identity: 76.3
  • Coverage: 118.0
  • Bit_score: 179
  • Evalue 9.40e-43

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 585
ATGGTCGCCACGCTTACCGACCCCGCCATCCTGCTGCCGGCCTTCGTGATGATCGCGGTGCTGGCCACCTTCTATACGCTGGCGGCGCCCTATTTCGAGCGCGGCGATCTCGACAAGCGCATGAAGGCGGTGGCGCTGGAGCGCGAGCAGATGCGGGCGCGCGAGCGCGCGCGCCTCAGCGCGGAAGCCGCGCAGAGCAAGGCTTCGCTGCGCGCCCAGCACAATACCTCCGTGCGCCAGGTCGTCGAGCGGCTGAACCTGCGCGAGGCGCTGGTCGACGCCAACACGATGAACCGGCTGCGCCAGGCCGGCTACCGGTCGCAGAACGCGCTCAACATCTTCCTCTTCGCCCGTTTCGTCCNNNNNNNNNNNNNNNNNNNNNNTTCGTGTTCCTGGCGCTGGCGGCCTTCTACATCCTCTACCTCGGTTCTCTCGGCGAAAAGCCGCTGCCGATCCGCATCCTCGCCACCGTCATCATCGGCTATATCGGCTTCTACGTGCCCAACATCTCCGTCTCCAACAAGGTGGGCAAGCGCCAGAAATCGATCCGCCGGGCCTGGCCGGATGCCCTCGACCTCATGCTGA
PROTEIN sequence
Length: 195
MVATLTDPAILLPAFVMIAVLATFYTLAAPYFERGDLDKRMKAVALEREQMRARERARLSAEAAQSKASLRAQHNTSVRQVVERLNLREALVDANTMNRLRQAGYRSQNALNIFLFARFVXXXXXXXXSCSWRWRPSTSSTSVLSAKSRCRSASSPPSSSAISASTCPTSPSPTRWASARNRSAGPGRMPSTSC*