ggKbase home page

SCNpilot_expt_1000_bf_scaffold_38862_curated_2

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 194..817

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EYR84456.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 207.0
  • Bit_score: 408
  • Evalue 4.50e-111
Transcriptional regulator, TetR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D417_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 99.4
  • Coverage: 157.0
  • Bit_score: 312
  • Evalue 2.40e-82
  • rbh
TetR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 53.6
  • Coverage: 196.0
  • Bit_score: 213
  • Evalue 8.10e-53

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 624
ATGAGCACCCTTCAGAAAAAGCGGCAGGAAATCCACGCCGCCATCCGCAACGCGGCCATCCAGGAGTTCGCGCGCAACGGCCTGTCAGGCACCTCCACCCAGGCGATCGCGCAGACGGCGGGCATCACCAAGGCCCAGCTACACTACTACATCTCCTCCAAGGAGGAGCTCTACCAGCAGGTCCTCAGCGACATCGTCGGAGCCTACAAGGACATCTTCTTCCTCTCCGCCTCGCGCGACGATCCGGCGCTGGCGATCACCCAGTATATCGAGCGCAAGGTACGCCATACGCTGGAATTCCCCGACCTCTCACGCTTCTTTGCCAATGAGATTGCCCGTGGCGCACCCGAGATGACGCCCCATTGGGCGGCGCTCAAGGCCGCGGTCGAGGAGGCGAACGCCGTGATCCAGCAATGGATCGACAGTGGCAAGATAACACCCGTCGATCCCCTGCTCTTCCAGATGAACATCTGGGCCGTGACCCAACACTATGCCGAATACGAGGCGCAGGCGCGCGTGCTGATGGACCGGCCGGAAAGCGAGGCACTCGATGCGGACCGCATCATCGCCGAAGCGACCGCGCTTTTCCTGCACCGCTGCGGACTTGCCGGCAAGGAGGCGTGA
PROTEIN sequence
Length: 208
MSTLQKKRQEIHAAIRNAAIQEFARNGLSGTSTQAIAQTAGITKAQLHYYISSKEELYQQVLSDIVGAYKDIFFLSASRDDPALAITQYIERKVRHTLEFPDLSRFFANEIARGAPEMTPHWAALKAAVEEANAVIQQWIDSGKITPVDPLLFQMNIWAVTQHYAEYEAQARVLMDRPESEALDADRIIAEATALFLHRCGLAGKEA*