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SCNpilot_expt_1000_bf_scaffold_7820_curated_9

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 7884..9338

Top 3 Functional Annotations

Value Algorithm Source
Putative chemoreceptor McpE {ECO:0000313|EMBL:EYR82038.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.3
  • Coverage: 485.0
  • Bit_score: 839
  • Evalue 2.40e-240
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003701A0F similarity UNIREF
DB: UNIREF100
  • Identity: 59.7
  • Coverage: 469.0
  • Bit_score: 533
  • Evalue 2.00e-148
  • rbh
chemoreceptor protein; K03406 methyl-accepting chemotaxis protein similarity KEGG
DB: KEGG
  • Identity: 58.1
  • Coverage: 485.0
  • Bit_score: 513
  • Evalue 6.80e-143
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1455
GTGCAGGAAATGCCGGCAGAACAGGCTCGAACGGGACAGGCGGCCAGCCTGCGCGACCGTTTGCGCTTTGCCGGCGTGGAGAGCGCCGAGGGCGAACTGCTCCGCCGCCACCGCCAGACGCTCGAGCNNNNNNNNNNNNNNNNNNNNCGTGACCTCTTCCAGCGTTTCCAGACCTTTCCCGATGCCGCCCGCCATTTCCAGAGCGAGCGCCAGATCGACCGCCTGCACGACCTCCAGAGCTCCCACTGGAGCGTGCTGACCGACGCCCGGTTCGACGCCCTCTATGCCGAACGCGTCAAGGTGCTCGCCGACAGCGAAAGCCAGATGGGCCTCGACCCGCGCTGGCGCATCGCCGGCCATTCGGTCGTCCTGGAGACGGTCGTCACCGGCCTCATCGAGGAATACTGGCCGAAATCCATCCTGCCCGGCGCCGGCAAGGCCCGCCGCAAGGAACTGACGGACCTCGTCTCGGCCTTCCTGCGCACCGCCATGGTCGATGCGGAGATCGGCGTCTCGCTGCGCTTCAACGAATTGCGCCATGCGCACAGCCGCGCGCTCGGCGAGCAGCGCAGGGAAGACCGCGCCGAGCTCGACCGCGTCTTCGGCGAAACCATCCGCAGCCTCTCGCAGCTCGATTTCTCCGCCCGCGTTTCCGGCGAGATGCCGGAAGCCTGGCAGGAGCTGGCCGAGACGCTGAACGGCGCGCTAAACGAAATCCAGTCGCGCCTCACCTCCGCCGCCGACCGTGCGGGCGAGAGCGACCGGCTCGTCTCGACGCTGGCCTCCGGCGCGGACGCCTTGTCCAACCGCTCCGCCGAGCAATCCGCGCACCTCCTCGAAACGGCCAACGCGCTCGGCGCCATCGTCGAGCGCGTGCGCCATACGCTCGCCGAGACGCGCAAGGCGCAGGGCGCGGCCGCCTCGACCCGGCAGTCGGTCGCGCTCAGCGGCTCCATCGTCGGCGAAGCCATGTCGGCCATGGCGGATATCGAGGCTTCGGCGGAAAAGATCGGCCAGATCATCGGCGTCATCGACGAGATCGCCTTCCAGACCAACCTGCTTGCGCTCAATGCCGGCATCGAGGCCGCCCGCGCCGGCGACAGCGGCCGCGGCTTTGCGGTCGTCGCGCAGGAAGTGCGCGCGCTCGCCCAGCGCTCCGCCGATGCCGCACGCGAAATCAAGCAGCTCGTGACGGGCACCAAGGCGCAGGTGGAAACCGGCGTCGAGCATGTCCACCGCACCCAGGATGCGATCGGCGACATCGTGCGCCAGGTCGAGGGCATCAACGAGGCCATCACCGGCATCGTCCAGGAAAGCGCCGTCGACGCCGAGGGGCTGGATGGCGTGACGGCCGACATCGGCCGCGCCGGCCGCGCGCTGGAGGCGGACGCTGCCGATGCGGGCCGCATCGGCACGATGGGCGGCGACCTCCCCACCGTGATCCTGGAACTCGGC
PROTEIN sequence
Length: 485
VQEMPAEQARTGQAASLRDRLRFAGVESAEGELLRRHRQTLEXXXXXXXRDLFQRFQTFPDAARHFQSERQIDRLHDLQSSHWSVLTDARFDALYAERVKVLADSESQMGLDPRWRIAGHSVVLETVVTGLIEEYWPKSILPGAGKARRKELTDLVSAFLRTAMVDAEIGVSLRFNELRHAHSRALGEQRREDRAELDRVFGETIRSLSQLDFSARVSGEMPEAWQELAETLNGALNEIQSRLTSAADRAGESDRLVSTLASGADALSNRSAEQSAHLLETANALGAIVERVRHTLAETRKAQGAAASTRQSVALSGSIVGEAMSAMADIEASAEKIGQIIGVIDEIAFQTNLLALNAGIEAARAGDSGRGFAVVAQEVRALAQRSADAAREIKQLVTGTKAQVETGVEHVHRTQDAIGDIVRQVEGINEAITGIVQESAVDAEGLDGVTADIGRAGRALEADAADAGRIGTMGGDLPTVILELG