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SCNpilot_expt_1000_bf_scaffold_7918_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 4484..5791

Top 3 Functional Annotations

Value Algorithm Source
PAS domain-containing S-box protein {ECO:0000313|EMBL:EYR81004.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.1
  • Coverage: 434.0
  • Bit_score: 763
  • Evalue 2.00e-217
Signal transduction histidine kinase similarity KEGG
DB: KEGG
  • Identity: 58.8
  • Coverage: 430.0
  • Bit_score: 490
  • Evalue 4.20e-136
  • rbh
Signal transduction histidine kinase n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LFU7_AGRSH similarity UNIREF
DB: UNIREF100
  • Identity: 58.8
  • Coverage: 430.0
  • Bit_score: 490
  • Evalue 1.30e-135
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1308
ATGCTCGGGGCGAATATCCAGATCGTCATCTTCTGGGGCCCGCAGTTTCTCGCGCTTTATAACGACGCCTATGCGCCGACCATCGGCACCAAGCATCCCCATGCGCTGGGCAGGCCCGCGCGCGAGCATTGGGCCGAGTTGTGGACGGACCTCGAACCGCTGCTGAAGCGCGTCCTGGAGACCGGCGAGACGGTCTCGGCGAAGGATCGGCCGTTCTACATAGAGCGGGGGCGCGGCCCCGAGACGGTCTATTTCGACATCTCCTATTCGCCCGTCCATGACGAGGAGGGTGCCGTCGCCGGCGTGTTCTGCATCGTCAACGAGACGACCGAGGTGAAGCGGGCGCAGGATCTCGAACGCCGGCTGGCAGCCATCATCGCGTCCACCGACGACGCGATCCTGAGCACCGACCTCGACATGACCATCACGAGCTGGAACCGGGGCGCCGAGCGGCTCTATGGCTATCGGGCCGACGAGATGATCGGTCGCTCGGTGCTGGCGCTCAACCCGGAGGATCGCAGCGACGAGGAATACGAGCTCTTCCGCCGGGTCGGCCTCGGCGAACATGTGCCTCCCTACGAGACCACGCGCCGGCGCAGCGACGGCACCCTTGTGGACGTATCCCTGACCGTGTCCCCCATCTACGGCGGGGCGGGCGAGATCGTCGGCGCCTCCAAGATCGCGCGGGACATCACGGCGAAAAAGCAGTTCGAGCGGTTCCAGGCGATGGCCATGGGCGAGCTCAAGCACCGCATCAAGAACGTTCTGTCGACGGTGACGGCGATCGCACGCCAGACCTTCACCAACGGCGATGAGGAGCGTGCCGCGGCCAGGACATTCGATGAGCGTCTGGCGTCCCTTGCGCGCGCCCACGACGTTCTGACGAGCGGAAGCTGGGAAGAGGCTGACCTGCGCACCGTCATCGACACGGCCCTGCTGCCATATTCCCCCGACCGCTTCCGCATCGAGGGCCCCGCCATGAGCGTGGGGGCACATGCGGTCACGGCGCTGACGCTGGCATTCCACGAGCTTGCGACGAATGCCGCAAAATACGGCGCGCTCTCGCGAGACGGCGGGCTCGTCTCCATCCATTGGCAAGCAAGCCGGGACCTTGGGCGTTTCAAGCTCCGATGGAGCGAGGAGGGCGGGCCGGAGGTGGTCATCCCGACCCGGCGCGGATTCGGCTCCAAGCTCATCGAGCGCCTCCTGGCCTCCGAACTCAAAGGCGAGGTTCGCCTGGAGTTCGCTCCATCCGGCCTGATCTGCGAAGTCGACGCCTCGCTCAGGGCGGAGGCAGCGGGACGCTAG
PROTEIN sequence
Length: 436
MLGANIQIVIFWGPQFLALYNDAYAPTIGTKHPHALGRPAREHWAELWTDLEPLLKRVLETGETVSAKDRPFYIERGRGPETVYFDISYSPVHDEEGAVAGVFCIVNETTEVKRAQDLERRLAAIIASTDDAILSTDLDMTITSWNRGAERLYGYRADEMIGRSVLALNPEDRSDEEYELFRRVGLGEHVPPYETTRRRSDGTLVDVSLTVSPIYGGAGEIVGASKIARDITAKKQFERFQAMAMGELKHRIKNVLSTVTAIARQTFTNGDEERAAARTFDERLASLARAHDVLTSGSWEEADLRTVIDTALLPYSPDRFRIEGPAMSVGAHAVTALTLAFHELATNAAKYGALSRDGGLVSIHWQASRDLGRFKLRWSEEGGPEVVIPTRRGFGSKLIERLLASELKGEVRLEFAPSGLICEVDASLRAEAAGR*