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SCNpilot_expt_1000_bf_scaffold_10460_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 4430..4831

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.1
  • Coverage: 135.0
  • Bit_score: 246
  • Evalue 2.50e-62
DNA-directed RNA polymerase subunit omega n=1 Tax=Rhizobium giardinii RepID=UPI000379FB4B similarity UNIREF
DB: UNIREF100
  • Identity: 89.6
  • Coverage: 135.0
  • Bit_score: 236
  • Evalue 1.40e-59
DNA-directed RNA polymerase subunit omega similarity KEGG
DB: KEGG
  • Identity: 89.5
  • Coverage: 133.0
  • Bit_score: 234
  • Evalue 1.70e-59

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 402
ATGGCCCGTGTCACCGTTGAAGATTGCATTGACAAGGTAGACAACCGCTTCGAGCTGGTTCTCCTGGCAAGCCATCGCGCCCGCCTCATCTCGCAGGGCGCCGCCATCACCATCGACCGCGACAACGACAAGAACCCGGTCGTCGCGCTGCGCGAGATCGCCGACGAGACGCTTTCGCCCGATGACCTCAAGGAAGACCTGATCCACTCGCTGCAGAAGCATGTGGAAGTGGACGAGCCTGAGCCCGATCCGGCAAGCCTGCTGGCCGAAGACGCCGTCACCGCCACCGTCGAAGAGGACGAGGACCAGCCGGAAACGATCGCCTTCGACCGCATGTCGGAAGAAGAGCTGCTCGCCGGCATCGAAGGTCTCGTTCCGCCGGAAAAGAGCGACGATTACTGA
PROTEIN sequence
Length: 134
MARVTVEDCIDKVDNRFELVLLASHRARLISQGAAITIDRDNDKNPVVALREIADETLSPDDLKEDLIHSLQKHVEVDEPEPDPASLLAEDAVTATVEEDEDQPETIAFDRMSEEELLAGIEGLVPPEKSDDY*