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SCNpilot_expt_1000_bf_scaffold_22895_curated_3

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 2020..2349

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, AraC family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1V3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 83.6
  • Coverage: 110.0
  • Bit_score: 190
  • Evalue 9.50e-46
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EYR78459.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.6
  • Coverage: 110.0
  • Bit_score: 190
  • Evalue 1.30e-45
transcriptional regulator, AraC family similarity KEGG
DB: KEGG
  • Identity: 64.4
  • Coverage: 101.0
  • Bit_score: 139
  • Evalue 6.10e-31

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 330
ATGGAAAAACTCAACGCCGCACGGCTGAAAGCGCTGGATGCCGACCACATCAGCAACCTCGCCCGCATGGAGCAGTCGAACGAGGACATTCTCGTCCACAGTTCGGAGATTCCGGGTGGCTATATCGTGCCGCGGCACCGTCATCGCCGCACGCAGTTCCTCTGTGTCTTCTCCGGCGTCGTGCTGGTGGCGACCGATCGCGGCCGCTGGATGATCCCGCCCGGCCATGCCCTGCTCATTCCCCGCGGGCTGGAGCATTCCGTCGAGATGTACAGCGATGTCAGCATGCGTTCGGTCTATATCTATTCGCCGGTCGGAAGGGCGGCCTCG
PROTEIN sequence
Length: 110
MEKLNAARLKALDADHISNLARMEQSNEDILVHSSEIPGGYIVPRHRHRRTQFLCVFSGVVLVATDRGRWMIPPGHALLIPRGLEHSVEMYSDVSMRSVYIYSPVGRAAS