ggKbase home page

SCNpilot_expt_1000_bf_scaffold_7521_curated_1

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 2..517

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZY7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 72.4
  • Coverage: 170.0
  • Bit_score: 257
  • Evalue 1.30e-65
Transcriptional regulator {ECO:0000313|EMBL:EYR81550.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.4
  • Coverage: 170.0
  • Bit_score: 257
  • Evalue 1.80e-65
TetR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 49.4
  • Coverage: 168.0
  • Bit_score: 171
  • Evalue 1.70e-40

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 516
AAGCTCGGCGTGTCGCGCTCCAGCTTCTACTGGTTCTTCGCGGAGCTGCAGGCTTTGCAGCGCGAGCTGCTGGAATACTGGCTGCGCAAGAACACCGGCCCGATCATCGAGCGCGCGCTCCTGCCGGCGGCGAGCGTCAACGAGGGCGTCTGCCATATCTTCGAATGCTGGGTGGATCCGGCGCTGTTCGACCCAGGCCTCGACGCCGCCGTGCGCGCCTGGGGCCGGATCGACGCCACCGTGCGCGCCGTCGTCGGCCGGGCGGACGACCAGCGGGTGGACGCCATCGCGCGTATGTTCCAGCGCTACGACTACCCGGCGGAAGAAGCCTTCATCCGGGCGCGCGTGCTCTATTTCACGCAGGTCGGCCACTTCACGCTCGGCATCGGCGACGACCGGGAAAAGCGCCTCGGGCACCTGCGCTCCTATCTCCTGACCTTCACCGGCCGCCCGGCCTCGGACCGCGAGGTGGCGGACTTCAGCGCGGTGATGCGGCGCCTGCTGCTGGACGGCTGA
PROTEIN sequence
Length: 172
KLGVSRSSFYWFFAELQALQRELLEYWLRKNTGPIIERALLPAASVNEGVCHIFECWVDPALFDPGLDAAVRAWGRIDATVRAVVGRADDQRVDAIARMFQRYDYPAEEAFIRARVLYFTQVGHFTLGIGDDREKRLGHLRSYLLTFTGRPASDREVADFSAVMRRLLLDG*