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SCNpilot_expt_1000_bf_scaffold_20046_curated_2

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 721..1266

Top 3 Functional Annotations

Value Algorithm Source
conjugative transfer signal peptidase TraF similarity KEGG
DB: KEGG
  • Identity: 82.3
  • Coverage: 181.0
  • Bit_score: 313
  • Evalue 5.10e-83
  • rbh
Conjugative transfer signal peptidase TraF n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VP23_RHOPX similarity UNIREF
DB: UNIREF100
  • Identity: 82.3
  • Coverage: 181.0
  • Bit_score: 313
  • Evalue 1.60e-82
  • rbh
Conjugative transfer signal peptidase TraF {ECO:0000313|EMBL:ADU42469.1}; Flags: Precursor;; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.3
  • Coverage: 181.0
  • Bit_score: 313
  • Evalue 2.30e-82

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Taxonomy

Rhodopseudomonas palustris → Rhodopseudomonas → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 546
ATGAGCCGCCGCCGCATCCTCGCGGTGACGCTGCTCGCCGTCATCGGCATCGCCGCCACCAGCGCGGCCGATATGCCGACAAAGCTGCTCTGGAACGCCACGGCGAGCGCGCCGGTCGGCCTTTACACCATCGAGCCAGCTGACCGGATCAAGGCGCCGGAACTGGTCGCCATCAGGCCGCCCGAACCGCTCGCCGATTTCATGATCGAGCGCGGCTACGTCGGGCGCGGCGTGCCACTCCTGAAGCGCGTCGTCGGTCTTCCTGGGCAGCAGGTCTGCCGGATCGGCCGCGACATTCTGATCGACGGAACCGCCATCGGCTCGGCACTCGCCCGCGACCGTTTAGGGCGAGAACTGCCGGTCTGGCAGGGCTGCCGCGTCATCGCCGACGGTCAGCTCTTCCTCATGAATTTTGACGTTCGAGACAGCCTGGACGGGCGCTACTTCGGCCCCATTCCGGCCAGCGCCATCATTGGCCGCGCGTTGCCGCTCTGGACCGACGAGGACGGCGACGGCCGCTTCGTCTGGCGCGCGCCGACGCGCTAA
PROTEIN sequence
Length: 182
MSRRRILAVTLLAVIGIAATSAADMPTKLLWNATASAPVGLYTIEPADRIKAPELVAIRPPEPLADFMIERGYVGRGVPLLKRVVGLPGQQVCRIGRDILIDGTAIGSALARDRLGRELPVWQGCRVIADGQLFLMNFDVRDSLDGRYFGPIPASAIIGRALPLWTDEDGDGRFVWRAPTR*