ggKbase home page

SCNpilot_expt_1000_bf_scaffold_20046_curated_4

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 1674..2564

Top 3 Functional Annotations

Value Algorithm Source
lytic transglycosylase similarity KEGG
DB: KEGG
  • Identity: 80.8
  • Coverage: 307.0
  • Bit_score: 498
  • Evalue 1.40e-138
  • rbh
Lytic transglycosylase catalytic n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VP25_RHOPX similarity UNIREF
DB: UNIREF100
  • Identity: 80.8
  • Coverage: 307.0
  • Bit_score: 498
  • Evalue 4.40e-138
  • rbh
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ADU42471.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.8
  • Coverage: 307.0
  • Bit_score: 498
  • Evalue 6.20e-138

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodopseudomonas palustris → Rhodopseudomonas → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 891
ATGCGGTCCCGTGTCGTCATCGCGCTTAAAGCCTCTATTCCTTTGTTCGCGGGAAAACCGTCTCATTCCTTCGTCCCGCTCGACCATCGGACGGCCAGTGCGCGCAGCGAAGGTCAAGGGCGGCCCCCGGCCGGCGCCTCGCGCGCACCCTTGACCGCAGCGAGCACGCTGGCAGGCTGGTGGTTCGGCGGAGAAAGCCGGGCACGGCGCTCTGCCGCTATCCTGATCGCTTGCGCGCTCGCGCTCGGCGCGGGACCGGCGACGACCTTGGCGCAATCCGCGCCGGTCGCGCGCACGGTTTCCGCCGATCCGCATGGCGGCCATATCGCCGAGGCGTCGCAGCGCTTCGGCATTCCCGAGCAGTGGATTCGCGCCGTCCTGCGCGCCGAAAGCGCGGGCGACGTGCGCGCNNNNNNNNNNNNNNNNNNNNNGGGCCTGCGCGTGCGCCATCGTCTCGGCCGCGATCCCTACGATCCGCGCGACAACATCCTCGCAGGCACCGCCTATCTGCGCGAGATGTGGGATCGCTACGGCAATGTCGCGGCGATGCTCGCCGCCTACAATGCCGGTCCCGGCCGCTATGACGAGCACCGCGCGATGGGCCGCCCGCTGCCCGCTGAAACCCGCGCCTATGTCGCCGCGCTCGCCCCGGTGCTCGGCGGCGCGGTCGCGGCCAGGACGCCGGAGAAACAATCCGCGCCGCCGCCCGATTGGCGCGATGCCCCGCTCTTCGTCATGCGTCCGAGCGACAGGCGCAGCGCCGATCCGGTGCAGACCATCGGTACATCAGGCGGCGCTCGCCCGACCGTTCCGGTGCGCGAGCGCCGCGATGCGGAGCCGCGTGACGGCAGCATGTTCGTCGCGCGCGCCGACGACGGGAGAGCGCCATGA
PROTEIN sequence
Length: 297
MRSRVVIALKASIPLFAGKPSHSFVPLDHRTASARSEGQGRPPAGASRAPLTAASTLAGWWFGGESRARRSAAILIACALALGAGPATTLAQSAPVARTVSADPHGGHIAEASQRFGIPEQWIRAVLRAESAGDVRXXXXXXXXGLRVRHRLGRDPYDPRDNILAGTAYLREMWDRYGNVAAMLAAYNAGPGRYDEHRAMGRPLPAETRAYVAALAPVLGGAVAARTPEKQSAPPPDWRDAPLFVMRPSDRRSADPVQTIGTSGGARPTVPVRERRDAEPRDGSMFVARADDGRAP*