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SCNpilot_expt_1000_bf_scaffold_11271_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 4711..5106

Top 3 Functional Annotations

Value Algorithm Source
GGDEF domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG30_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 80.6
  • Coverage: 129.0
  • Bit_score: 209
  • Evalue 2.40e-51
GGDEF domain-containing protein {ECO:0000313|EMBL:EYR80657.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.6
  • Coverage: 129.0
  • Bit_score: 209
  • Evalue 3.30e-51
GGDEF domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 51.9
  • Coverage: 129.0
  • Bit_score: 141
  • Evalue 1.90e-31

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 396
GTGCATGGCGGCCTGCTCTTCCTCGATGTCGACCACTTCAAGTCCGTCAACGACCGGTTCGGCCATGCGGCCGGCGACCAGGCGCTCGGTCGCGTCGGCGCGCTGCTGTCGGCGCTTTCCGCAGACAACGATCTCGTCGGGCGGCTGGGCGGCGAGGAATTCGCCGTCTTCCTGCACCAGGCCTCGCCGGAACGCATGCTCGACCACTCCCAGGCGATCCGCGAGGCGATCGAGGCCATCGACCTTGCCTCGCCGACGGGCACCCGCATCGCCCTCGGCATCAGCATCGGCGCCTTCCACTGCGCCCCCCGCTTCGACCCCGCCGAAGCGCTCGCGGCATCCGACCGCAACCTCTATCGCGCGAAGTCCGGCGGCAGGAACATGGTCGTGGCCTGA
PROTEIN sequence
Length: 132
VHGGLLFLDVDHFKSVNDRFGHAAGDQALGRVGALLSALSADNDLVGRLGGEEFAVFLHQASPERMLDHSQAIREAIEAIDLASPTGTRIALGISIGAFHCAPRFDPAEALAASDRNLYRAKSGGRNMVVA*